Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06520

Experiment: soil sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06515 and ABZR87_RS06520 overlap by 4 nucleotidesABZR87_RS06520 and ABZR87_RS06525 overlap by 1 nucleotidesABZR87_RS06525 and ABZR87_RS06530 are separated by 9 nucleotides ABZR87_RS06515: ABZR87_RS06515 - ABC transporter permease, at 1,386,406 to 1,387,530 _RS06515 ABZR87_RS06520: ABZR87_RS06520 - ABC transporter ATP-binding protein, at 1,387,527 to 1,388,408 _RS06520 ABZR87_RS06525: ABZR87_RS06525 - MlaD family protein, at 1,388,408 to 1,389,376 _RS06525 ABZR87_RS06530: ABZR87_RS06530 - ABC-type transport auxiliary lipoprotein family protein, at 1,389,386 to 1,390,060 _RS06530 Position (kb) 1387 1388 1389Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1386.889 kb on + strand, within ABZR87_RS06515at 1386.889 kb on + strand, within ABZR87_RS06515at 1386.889 kb on + strand, within ABZR87_RS06515at 1386.889 kb on + strand, within ABZR87_RS06515at 1386.890 kb on - strand, within ABZR87_RS06515at 1386.890 kb on - strand, within ABZR87_RS06515at 1386.890 kb on - strand, within ABZR87_RS06515at 1386.890 kb on - strand, within ABZR87_RS06515at 1386.902 kb on - strand, within ABZR87_RS06515at 1386.958 kb on + strand, within ABZR87_RS06515at 1386.958 kb on + strand, within ABZR87_RS06515at 1386.959 kb on - strand, within ABZR87_RS06515at 1387.011 kb on + strand, within ABZR87_RS06515at 1387.012 kb on - strand, within ABZR87_RS06515at 1387.012 kb on - strand, within ABZR87_RS06515at 1387.012 kb on - strand, within ABZR87_RS06515at 1387.012 kb on - strand, within ABZR87_RS06515at 1387.254 kb on + strand, within ABZR87_RS06515at 1387.255 kb on - strand, within ABZR87_RS06515at 1387.282 kb on - strand, within ABZR87_RS06515at 1387.294 kb on + strand, within ABZR87_RS06515at 1387.294 kb on + strand, within ABZR87_RS06515at 1387.294 kb on + strand, within ABZR87_RS06515at 1387.294 kb on + strand, within ABZR87_RS06515at 1387.295 kb on - strand, within ABZR87_RS06515at 1387.295 kb on - strand, within ABZR87_RS06515at 1387.295 kb on - strand, within ABZR87_RS06515at 1387.295 kb on - strand, within ABZR87_RS06515at 1387.295 kb on - strand, within ABZR87_RS06515at 1387.295 kb on - strand, within ABZR87_RS06515at 1387.463 kb on + strandat 1387.463 kb on + strandat 1387.526 kb on + strandat 1387.527 kb on - strandat 1387.632 kb on + strand, within ABZR87_RS06520at 1388.130 kb on + strand, within ABZR87_RS06520at 1388.130 kb on + strand, within ABZR87_RS06520at 1388.130 kb on + strand, within ABZR87_RS06520at 1388.131 kb on - strand, within ABZR87_RS06520at 1388.131 kb on - strand, within ABZR87_RS06520at 1388.310 kb on + strand, within ABZR87_RS06520at 1388.311 kb on - strand, within ABZR87_RS06520at 1388.311 kb on - strand, within ABZR87_RS06520at 1388.311 kb on - strand, within ABZR87_RS06520at 1388.311 kb on - strand, within ABZR87_RS06520at 1388.447 kb on - strandat 1388.447 kb on - strandat 1388.519 kb on + strand, within ABZR87_RS06525at 1388.577 kb on - strand, within ABZR87_RS06525at 1388.577 kb on - strand, within ABZR87_RS06525at 1388.623 kb on + strand, within ABZR87_RS06525at 1388.623 kb on + strand, within ABZR87_RS06525at 1388.623 kb on + strand, within ABZR87_RS06525at 1388.623 kb on + strand, within ABZR87_RS06525at 1388.624 kb on - strand, within ABZR87_RS06525at 1388.624 kb on - strand, within ABZR87_RS06525at 1388.624 kb on - strand, within ABZR87_RS06525at 1388.624 kb on - strand, within ABZR87_RS06525at 1388.690 kb on + strand, within ABZR87_RS06525at 1388.690 kb on + strand, within ABZR87_RS06525at 1388.690 kb on + strand, within ABZR87_RS06525at 1388.690 kb on + strand, within ABZR87_RS06525at 1388.690 kb on + strand, within ABZR87_RS06525at 1388.691 kb on - strand, within ABZR87_RS06525at 1388.691 kb on - strand, within ABZR87_RS06525at 1388.691 kb on - strand, within ABZR87_RS06525at 1388.691 kb on - strand, within ABZR87_RS06525at 1388.705 kb on + strand, within ABZR87_RS06525at 1388.729 kb on + strand, within ABZR87_RS06525at 1388.729 kb on + strand, within ABZR87_RS06525at 1388.729 kb on + strand, within ABZR87_RS06525at 1388.729 kb on + strand, within ABZR87_RS06525at 1388.730 kb on - strand, within ABZR87_RS06525at 1388.730 kb on - strand, within ABZR87_RS06525at 1388.730 kb on - strand, within ABZR87_RS06525at 1388.730 kb on - strand, within ABZR87_RS06525at 1388.981 kb on + strand, within ABZR87_RS06525at 1388.981 kb on + strand, within ABZR87_RS06525at 1388.982 kb on - strand, within ABZR87_RS06525at 1388.982 kb on - strand, within ABZR87_RS06525at 1388.982 kb on - strand, within ABZR87_RS06525at 1389.189 kb on - strand, within ABZR87_RS06525at 1389.340 kb on + strandat 1389.340 kb on + strandat 1389.340 kb on + strandat 1389.341 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB
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1,386,889 + ABZR87_RS06515 0.43 +1.0
1,386,889 + ABZR87_RS06515 0.43 +0.3
1,386,889 + ABZR87_RS06515 0.43 -0.5
1,386,889 + ABZR87_RS06515 0.43 +0.1
1,386,890 - ABZR87_RS06515 0.43 -0.2
1,386,890 - ABZR87_RS06515 0.43 +0.1
1,386,890 - ABZR87_RS06515 0.43 +1.0
1,386,890 - ABZR87_RS06515 0.43 -1.1
1,386,902 - ABZR87_RS06515 0.44 +0.4
1,386,958 + ABZR87_RS06515 0.49 +0.1
1,386,958 + ABZR87_RS06515 0.49 +0.1
1,386,959 - ABZR87_RS06515 0.49 +2.0
1,387,011 + ABZR87_RS06515 0.54 +1.1
1,387,012 - ABZR87_RS06515 0.54 -0.4
1,387,012 - ABZR87_RS06515 0.54 -1.0
1,387,012 - ABZR87_RS06515 0.54 -0.1
1,387,012 - ABZR87_RS06515 0.54 +0.2
1,387,254 + ABZR87_RS06515 0.75 +0.5
1,387,255 - ABZR87_RS06515 0.75 -0.2
1,387,282 - ABZR87_RS06515 0.78 +1.5
1,387,294 + ABZR87_RS06515 0.79 -0.8
1,387,294 + ABZR87_RS06515 0.79 +0.1
1,387,294 + ABZR87_RS06515 0.79 +0.3
1,387,294 + ABZR87_RS06515 0.79 +0.6
1,387,295 - ABZR87_RS06515 0.79 +0.5
1,387,295 - ABZR87_RS06515 0.79 -0.3
1,387,295 - ABZR87_RS06515 0.79 +0.4
1,387,295 - ABZR87_RS06515 0.79 -0.4
1,387,295 - ABZR87_RS06515 0.79 -0.5
1,387,295 - ABZR87_RS06515 0.79 +0.4
1,387,463 + -0.4
1,387,463 + +0.8
1,387,526 + -0.7
1,387,527 - +1.4
1,387,632 + ABZR87_RS06520 0.12 -0.1
1,388,130 + ABZR87_RS06520 0.68 -0.0
1,388,130 + ABZR87_RS06520 0.68 -0.6
1,388,130 + ABZR87_RS06520 0.68 +0.3
1,388,131 - ABZR87_RS06520 0.68 +0.5
1,388,131 - ABZR87_RS06520 0.68 +0.3
1,388,310 + ABZR87_RS06520 0.89 +0.2
1,388,311 - ABZR87_RS06520 0.89 +0.7
1,388,311 - ABZR87_RS06520 0.89 +1.1
1,388,311 - ABZR87_RS06520 0.89 +2.3
1,388,311 - ABZR87_RS06520 0.89 +0.0
1,388,447 - +0.6
1,388,447 - +0.9
1,388,519 + ABZR87_RS06525 0.11 -0.0
1,388,577 - ABZR87_RS06525 0.17 -0.5
1,388,577 - ABZR87_RS06525 0.17 +0.5
1,388,623 + ABZR87_RS06525 0.22 +0.7
1,388,623 + ABZR87_RS06525 0.22 +0.9
1,388,623 + ABZR87_RS06525 0.22 -1.0
1,388,623 + ABZR87_RS06525 0.22 +0.2
1,388,624 - ABZR87_RS06525 0.22 -0.6
1,388,624 - ABZR87_RS06525 0.22 -0.4
1,388,624 - ABZR87_RS06525 0.22 -0.1
1,388,624 - ABZR87_RS06525 0.22 -0.3
1,388,690 + ABZR87_RS06525 0.29 -1.4
1,388,690 + ABZR87_RS06525 0.29 +0.4
1,388,690 + ABZR87_RS06525 0.29 +0.1
1,388,690 + ABZR87_RS06525 0.29 -1.0
1,388,690 + ABZR87_RS06525 0.29 +0.2
1,388,691 - ABZR87_RS06525 0.29 -1.4
1,388,691 - ABZR87_RS06525 0.29 -1.1
1,388,691 - ABZR87_RS06525 0.29 +0.5
1,388,691 - ABZR87_RS06525 0.29 +1.3
1,388,705 + ABZR87_RS06525 0.31 -0.0
1,388,729 + ABZR87_RS06525 0.33 +0.9
1,388,729 + ABZR87_RS06525 0.33 -0.2
1,388,729 + ABZR87_RS06525 0.33 -0.6
1,388,729 + ABZR87_RS06525 0.33 -0.1
1,388,730 - ABZR87_RS06525 0.33 +0.3
1,388,730 - ABZR87_RS06525 0.33 +1.3
1,388,730 - ABZR87_RS06525 0.33 -0.3
1,388,730 - ABZR87_RS06525 0.33 -1.3
1,388,981 + ABZR87_RS06525 0.59 +0.6
1,388,981 + ABZR87_RS06525 0.59 -0.5
1,388,982 - ABZR87_RS06525 0.59 +0.8
1,388,982 - ABZR87_RS06525 0.59 -0.9
1,388,982 - ABZR87_RS06525 0.59 +0.4
1,389,189 - ABZR87_RS06525 0.81 -0.8
1,389,340 + -0.3
1,389,340 + -0.1
1,389,340 + -2.9
1,389,341 - +0.0

Or see this region's nucleotide sequence