Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04955

Experiment: soil sample 7; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	soil sample 7; outgrowth in LB
1,038,910	+		ABZR87_RS04950	0.35	-0.1
1,038,910	+		ABZR87_RS04950	0.35	+0.5
1,038,911	-		ABZR87_RS04950	0.35	+0.3
1,039,198	-		ABZR87_RS04950	0.57	+0.3
1,039,198	-		ABZR87_RS04950	0.57	+0.7
1,039,198	-		ABZR87_RS04950	0.57	+0.6
1,039,198	-		ABZR87_RS04950	0.57	-0.5
1,039,290	+		ABZR87_RS04950	0.64	+3.0
1,039,290	+		ABZR87_RS04950	0.64	+1.4
1,039,291	-		ABZR87_RS04950	0.64	+0.5
1,039,291	-		ABZR87_RS04950	0.64	+0.6
1,039,301	+		ABZR87_RS04950	0.65	-0.1
1,039,301	+		ABZR87_RS04950	0.65	+0.1
1,039,301	+		ABZR87_RS04950	0.65	-1.4
1,039,302	-		ABZR87_RS04950	0.65	+0.3
1,039,302	-		ABZR87_RS04950	0.65	-0.1
1,039,302	-		ABZR87_RS04950	0.65	-0.0
1,039,326	+		ABZR87_RS04950	0.67	+0.1
1,039,326	+		ABZR87_RS04950	0.67	+1.1
1,039,326	+		ABZR87_RS04950	0.67	-0.3
1,039,327	-		ABZR87_RS04950	0.67	+0.2
1,039,327	-		ABZR87_RS04950	0.67	+0.2
1,039,327	-		ABZR87_RS04950	0.67	-1.0
1,039,488	+		ABZR87_RS04950	0.79	-0.1
1,039,489	-		ABZR87_RS04950	0.79	-1.0
1,039,489	-		ABZR87_RS04950	0.79	-0.0
1,039,489	-		ABZR87_RS04950	0.79	+0.1
1,039,523	+		ABZR87_RS04950	0.81	-0.3
1,039,524	-		ABZR87_RS04950	0.81	+2.0
1,039,618	-		ABZR87_RS04950	0.88	-0.6
1,039,843	+				+0.2
1,039,843	+				+0.4
1,039,843	+				+0.0
1,039,843	+				+0.3
1,039,843	+				+0.3
1,039,844	-				-1.2
1,039,844	-				-0.1
1,039,845	+				-0.4
1,039,845	+				-0.1
1,039,845	+				+1.3
1,039,845	+				-0.7
1,039,846	-				-0.4
1,039,846	-				+1.2
1,039,846	-				+0.7
1,039,876	+				+0.1
1,039,877	-				+0.2
1,039,877	-				-0.2
1,039,885	+				-0.3
1,039,885	+				-1.3
1,040,050	+		ABZR87_RS04955	0.20	-1.8
1,040,050	+		ABZR87_RS04955	0.20	+1.0
1,040,051	-		ABZR87_RS04955	0.20	-0.5
1,040,381	+		ABZR87_RS04955	0.59	-0.7
1,040,381	+		ABZR87_RS04955	0.59	+0.7
1,040,381	+		ABZR87_RS04955	0.59	-1.3
1,040,381	+		ABZR87_RS04955	0.59	-0.7
1,040,382	-		ABZR87_RS04955	0.59	-0.9
1,040,382	-		ABZR87_RS04955	0.59	+0.0
1,040,382	-		ABZR87_RS04955	0.59	+0.2
1,040,382	-		ABZR87_RS04955	0.59	-5.1
1,040,470	+		ABZR87_RS04955	0.69	-0.5
1,040,470	+		ABZR87_RS04955	0.69	-1.2
1,040,470	+		ABZR87_RS04955	0.69	-0.4
1,040,471	-		ABZR87_RS04955	0.69	-0.0
1,040,471	-		ABZR87_RS04955	0.69	-0.6
1,040,471	-		ABZR87_RS04955	0.69	+0.4
1,040,471	-		ABZR87_RS04955	0.69	+0.4
1,040,471	-		ABZR87_RS04955	0.69	-0.5
1,040,471	-		ABZR87_RS04955	0.69	+0.0
1,040,524	+		ABZR87_RS04955	0.75	-0.3
1,040,566	+		ABZR87_RS04955	0.80	+0.7
1,040,566	+		ABZR87_RS04955	0.80	-0.1
1,040,566	+		ABZR87_RS04955	0.80	-1.0
1,040,566	+		ABZR87_RS04955	0.80	-0.9
1,040,566	+		ABZR87_RS04955	0.80	-1.0
1,040,566	+		ABZR87_RS04955	0.80	-0.1
1,040,566	+		ABZR87_RS04955	0.80	+0.2
1,040,566	+		ABZR87_RS04955	0.80	-0.6
1,040,566	+		ABZR87_RS04955	0.80	+0.6
1,040,566	+		ABZR87_RS04955	0.80	+1.0
1,040,567	-		ABZR87_RS04955	0.80	+0.6
1,040,567	-		ABZR87_RS04955	0.80	-0.1
1,040,567	-		ABZR87_RS04955	0.80	+0.4
1,040,599	+		ABZR87_RS04955	0.84	-2.1
1,040,599	+		ABZR87_RS04955	0.84	-1.0
1,040,599	+		ABZR87_RS04955	0.84	-1.4
1,040,599	+		ABZR87_RS04955	0.84	+0.1
1,040,599	+		ABZR87_RS04955	0.84	-0.2
1,040,600	-		ABZR87_RS04955	0.84	+0.2
1,040,735	+				+1.4
1,040,736	-				-0.0
1,040,736	-				-0.1
1,040,736	-				-0.1
1,040,777	+				-0.1
1,040,777	+				-0.9
1,040,777	+				-0.3
1,040,778	-				+0.4
1,040,778	-				+0.8
1,041,250	+		ABZR87_RS04960	0.60	+0.7
1,041,250	+		ABZR87_RS04960	0.60	-0.2
1,041,251	-		ABZR87_RS04960	0.60	-0.5
1,041,251	-		ABZR87_RS04960	0.60	-0.3
1,041,251	-		ABZR87_RS04960	0.60	+1.7
1,041,259	+		ABZR87_RS04960	0.61	+0.2
1,041,259	+		ABZR87_RS04960	0.61	-0.8
1,041,259	+		ABZR87_RS04960	0.61	+1.5
1,041,259	+		ABZR87_RS04960	0.61	+0.1
1,041,260	-		ABZR87_RS04960	0.61	-0.5
1,041,260	-		ABZR87_RS04960	0.61	-0.7
1,041,260	-		ABZR87_RS04960	0.61	+0.3
1,041,260	-		ABZR87_RS04960	0.61	-1.5
1,041,299	+		ABZR87_RS04960	0.67	-0.3
1,041,299	+		ABZR87_RS04960	0.67	-0.3
1,041,299	+		ABZR87_RS04960	0.67	+0.1
1,041,299	+		ABZR87_RS04960	0.67	-0.5
1,041,300	-		ABZR87_RS04960	0.68	-0.5
1,041,424	+		ABZR87_RS04960	0.86	+0.9
1,041,425	+		ABZR87_RS04960	0.87	+0.5
1,041,425	+		ABZR87_RS04960	0.87	-0.1
1,041,426	-		ABZR87_RS04960	0.87	+1.8
1,041,426	-		ABZR87_RS04960	0.87	-0.6
1,041,427	+		ABZR87_RS04960	0.87	-0.8
1,041,427	+		ABZR87_RS04960	0.87	-0.2
1,041,427	+		ABZR87_RS04960	0.87	+0.3
1,041,427	+		ABZR87_RS04960	0.87	-0.9
1,041,427	+		ABZR87_RS04960	0.87	+0.3
1,041,427	+		ABZR87_RS04960	0.87	-1.0
1,041,427	+		ABZR87_RS04960	0.87	+2.3
1,041,427	+		ABZR87_RS04960	0.87	+0.4
1,041,427	+		ABZR87_RS04960	0.87	-0.4
1,041,427	+		ABZR87_RS04960	0.87	-0.6
1,041,428	-		ABZR87_RS04960	0.87	+0.1
1,041,428	-		ABZR87_RS04960	0.87	-0.1
1,041,428	-		ABZR87_RS04960	0.87	+0.1
1,041,428	-		ABZR87_RS04960	0.87	-0.6
1,041,428	-		ABZR87_RS04960	0.87	+0.1
1,041,428	-		ABZR87_RS04960	0.87	+0.4
1,041,428	-		ABZR87_RS04960	0.87	-0.3
1,041,428	-		ABZR87_RS04960	0.87	+1.4
1,041,428	-		ABZR87_RS04960	0.87	+0.6
1,041,428	-		ABZR87_RS04960	0.87	+0.4
1,041,428	-		ABZR87_RS04960	0.87	+1.0
1,041,428	-		ABZR87_RS04960	0.87	-0.1
1,041,428	-		ABZR87_RS04960	0.87	-0.1
1,041,428	-		ABZR87_RS04960	0.87	-0.3
1,041,428	-		ABZR87_RS04960	0.87	-0.3
1,041,528	+				-0.3
1,041,528	+				+0.7
1,041,528	+				-0.5
1,041,528	+				-0.4
1,041,528	+				+0.2
1,041,528	+				-0.2
1,041,528	+				+0.3
1,041,528	+				-0.0
1,041,528	+				+0.1
1,041,528	+				-0.3
1,041,528	+				-0.2
1,041,528	+				+0.2
1,041,528	+				-0.2
1,041,528	+				+0.4
1,041,528	+				+0.1
1,041,528	+				-0.0
1,041,528	+				-0.4
1,041,529	-				+0.2
1,041,529	-				-0.2
1,041,529	-				-0.8
1,041,529	-				-0.2
1,041,529	-				-1.4
1,041,529	-				-1.6
1,041,529	-				-0.8
1,041,529	-				-0.3
1,041,529	-				+0.0
1,041,529	-				-0.0
1,041,529	-				+1.1
1,041,529	-				-1.1
1,041,529	-				-0.5
1,041,529	-				-1.0
1,041,529	-				-0.7
1,041,529	-				-0.7
1,041,529	-				-2.5
1,041,530	+				-1.0
1,041,530	+				+0.1
1,041,530	+				-0.1
1,041,530	+				+0.3
1,041,530	+				+0.2
1,041,530	+				+0.9
1,041,530	+				-0.4
1,041,530	+				+0.4
1,041,530	+				+0.5
1,041,531	-				+0.3
1,041,531	-				-1.0
1,041,531	-				+0.1
1,041,531	-				+0.7
1,041,531	-				-0.9
1,041,532	+				-0.6
1,041,532	+				-0.7
1,041,532	+				-0.7
1,041,532	+				-0.8
1,041,532	+				+0.3
1,041,532	+				-0.8
1,041,532	+				+0.1
1,041,532	+				-0.2
1,041,532	+				-1.2
1,041,532	+				-0.6
1,041,532	+				+0.4
1,041,532	+				-0.4
1,041,532	+				-0.7
1,041,532	+				-0.0
1,041,532	+				+0.2
1,041,532	+				+0.2
1,041,532	+				+0.3
1,041,532	+				-0.1
1,041,533	-				-0.2
1,041,533	-				+0.5
1,041,533	-				+0.7
1,041,533	-				+1.7
1,041,533	-				-0.2
1,041,533	-				+0.3
1,041,533	-				-0.3
1,041,533	-				-0.3
1,041,533	-				-0.8
1,041,533	-				-0.2
1,041,533	-				+0.6
1,041,533	-				-0.3
1,041,533	-				-1.1
1,041,533	-				-0.0
1,041,533	-				+0.3
1,041,533	-				-0.1
1,041,533	-				+0.1
1,041,533	-				+0.4
1,041,533	-				-0.6
1,041,536	+				-0.6
1,041,536	+				+0.4
1,041,536	+				+0.2
1,041,536	+				-2.5
1,041,536	+				+0.0
1,041,536	+				-0.8
1,041,536	+				-0.2
1,041,536	+				-0.7
1,041,536	+				+1.0
1,041,537	-				-0.5
1,041,537	-				-0.4
1,041,537	-				+0.5
1,041,537	-				+0.0
1,041,537	-				+0.2
1,041,537	-				-0.9
1,041,537	-				-0.3