Experiment: soil sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00055 and ABZR87_RS00060 are separated by 10 nucleotides ABZR87_RS00060 and ABZR87_RS00065 are separated by 12 nucleotides ABZR87_RS00065 and ABZR87_RS00070 overlap by 16 nucleotides
ABZR87_RS00055: ABZR87_RS00055 - threonine-phosphate decarboxylase CobD, at 13,001 to 14,008
_RS00055
ABZR87_RS00060: ABZR87_RS00060 - cobalamin-binding protein, at 14,019 to 14,975
_RS00060
ABZR87_RS00065: ABZR87_RS00065 - alpha-ribazole phosphatase, at 14,988 to 15,575
_RS00065
ABZR87_RS00070: ABZR87_RS00070 - adenosylcobinamide-GDP ribazoletransferase, at 15,560 to 16,330
_RS00070
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.187 kb on + strand, within ABZR87_RS00055 at 13.307 kb on + strand, within ABZR87_RS00055 at 13.513 kb on + strand, within ABZR87_RS00055 at 13.513 kb on + strand, within ABZR87_RS00055 at 13.598 kb on + strand, within ABZR87_RS00055 at 13.599 kb on - strand, within ABZR87_RS00055 at 13.872 kb on + strand, within ABZR87_RS00055 at 13.872 kb on + strand, within ABZR87_RS00055 at 13.872 kb on + strand, within ABZR87_RS00055 at 13.873 kb on - strand, within ABZR87_RS00055 at 13.983 kb on + strand at 13.983 kb on + strand at 13.984 kb on - strand at 13.984 kb on - strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.251 kb on - strand, within ABZR87_RS00060 at 14.444 kb on + strand, within ABZR87_RS00060 at 14.444 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.580 kb on + strand, within ABZR87_RS00060 at 14.581 kb on - strand, within ABZR87_RS00060 at 14.581 kb on - strand, within ABZR87_RS00060 at 14.581 kb on - strand, within ABZR87_RS00060 at 15.831 kb on + strand, within ABZR87_RS00070 at 15.831 kb on + strand, within ABZR87_RS00070 at 15.831 kb on + strand, within ABZR87_RS00070 at 15.831 kb on + strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070 at 15.832 kb on - strand, within ABZR87_RS00070
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB remove 13,187 + ABZR87_RS00055 0.18 +2.0 13,307 + ABZR87_RS00055 0.30 -1.1 13,513 + ABZR87_RS00055 0.51 +0.7 13,513 + ABZR87_RS00055 0.51 -0.2 13,598 + ABZR87_RS00055 0.59 +1.0 13,599 - ABZR87_RS00055 0.59 -0.4 13,872 + ABZR87_RS00055 0.86 +0.9 13,872 + ABZR87_RS00055 0.86 -0.3 13,872 + ABZR87_RS00055 0.86 -0.8 13,873 - ABZR87_RS00055 0.87 -0.1 13,983 + -0.5 13,983 + +0.7 13,984 - -0.8 13,984 - +0.2 14,055 + -0.7 14,055 + +0.9 14,055 + +1.0 14,055 + -0.0 14,055 + -0.3 14,055 + +0.2 14,055 + -0.5 14,056 - -0.6 14,056 - -1.2 14,056 - -0.5 14,056 - +0.6 14,056 - -0.8 14,056 - -0.3 14,056 - +0.5 14,056 - -0.2 14,056 - +1.1 14,056 - -0.3 14,251 - ABZR87_RS00060 0.24 +0.2 14,444 + ABZR87_RS00060 0.44 -2.3 14,444 + ABZR87_RS00060 0.44 -1.3 14,580 + ABZR87_RS00060 0.59 -1.6 14,580 + ABZR87_RS00060 0.59 -0.4 14,580 + ABZR87_RS00060 0.59 -0.6 14,580 + ABZR87_RS00060 0.59 -0.8 14,580 + ABZR87_RS00060 0.59 -1.3 14,580 + ABZR87_RS00060 0.59 -1.1 14,580 + ABZR87_RS00060 0.59 -0.9 14,581 - ABZR87_RS00060 0.59 -1.7 14,581 - ABZR87_RS00060 0.59 -1.8 14,581 - ABZR87_RS00060 0.59 -0.7 15,831 + ABZR87_RS00070 0.35 +0.1 15,831 + ABZR87_RS00070 0.35 +0.2 15,831 + ABZR87_RS00070 0.35 -0.5 15,831 + ABZR87_RS00070 0.35 -0.6 15,832 - ABZR87_RS00070 0.35 +0.1 15,832 - ABZR87_RS00070 0.35 +0.6 15,832 - ABZR87_RS00070 0.35 +0.8 15,832 - ABZR87_RS00070 0.35 +0.8 15,832 - ABZR87_RS00070 0.35 +1.1
Or see this region's nucleotide sequence