Experiment: Zinc 0.01953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thrS and xthA are separated by 86 nucleotides xthA and Synpcc7942_2608 are separated by 100 nucleotides Synpcc7942_2608 and Synpcc7942_2609 are separated by 201 nucleotides
Synpcc7942_2606: thrS - threonyl-tRNA synthetase, at 2,688,305 to 2,690,119
thrS
Synpcc7942_2607: xthA - Exodeoxyribonuclease III, at 2,690,206 to 2,691,003
xthA
Synpcc7942_2608: Synpcc7942_2608 - hypothetical protein, at 2,691,104 to 2,691,424
_2608
Synpcc7942_2609: Synpcc7942_2609 - hypothetical protein, at 2,691,626 to 2,692,156
_2609
Position (kb)
2690
2691
2692 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2690.192 kb on + strand at 2690.192 kb on + strand at 2690.200 kb on - strand at 2690.200 kb on - strand at 2690.229 kb on + strand at 2690.236 kb on + strand at 2690.237 kb on - strand at 2690.253 kb on + strand at 2690.253 kb on + strand at 2690.261 kb on - strand at 2690.276 kb on - strand at 2690.276 kb on - strand at 2690.317 kb on - strand, within xthA at 2690.331 kb on - strand, within xthA at 2690.363 kb on - strand, within xthA at 2690.381 kb on - strand, within xthA at 2690.410 kb on - strand, within xthA at 2690.412 kb on + strand, within xthA at 2690.412 kb on + strand at 2690.412 kb on + strand, within xthA at 2690.459 kb on + strand, within xthA at 2690.474 kb on - strand, within xthA at 2690.474 kb on - strand, within xthA at 2690.480 kb on + strand at 2690.534 kb on + strand, within xthA at 2690.562 kb on - strand, within xthA at 2690.576 kb on + strand, within xthA at 2690.586 kb on + strand, within xthA at 2690.612 kb on + strand at 2690.630 kb on - strand, within xthA at 2690.630 kb on - strand, within xthA at 2690.644 kb on + strand, within xthA at 2690.644 kb on + strand, within xthA at 2690.649 kb on + strand, within xthA at 2690.649 kb on + strand, within xthA at 2690.649 kb on + strand, within xthA at 2690.657 kb on - strand, within xthA at 2690.657 kb on - strand, within xthA at 2690.667 kb on - strand, within xthA at 2690.724 kb on - strand, within xthA at 2690.740 kb on + strand, within xthA at 2690.781 kb on - strand, within xthA at 2690.788 kb on - strand, within xthA at 2690.790 kb on + strand, within xthA at 2690.791 kb on - strand, within xthA at 2690.796 kb on - strand, within xthA at 2690.824 kb on + strand, within xthA at 2690.841 kb on + strand, within xthA at 2690.851 kb on + strand, within xthA at 2690.853 kb on - strand, within xthA at 2690.854 kb on - strand, within xthA at 2690.865 kb on - strand, within xthA at 2690.877 kb on - strand, within xthA at 2690.877 kb on - strand, within xthA at 2690.912 kb on - strand, within xthA at 2690.934 kb on + strand at 2690.953 kb on - strand at 2691.005 kb on - strand at 2691.030 kb on + strand at 2691.077 kb on - strand at 2691.086 kb on + strand at 2691.128 kb on - strand at 2691.136 kb on + strand, within Synpcc7942_2608 at 2691.149 kb on - strand, within Synpcc7942_2608 at 2691.169 kb on - strand, within Synpcc7942_2608 at 2691.204 kb on + strand, within Synpcc7942_2608 at 2691.212 kb on - strand, within Synpcc7942_2608 at 2691.212 kb on - strand, within Synpcc7942_2608 at 2691.348 kb on - strand, within Synpcc7942_2608 at 2691.396 kb on - strand at 2691.396 kb on - strand at 2691.429 kb on - strand at 2691.434 kb on + strand at 2691.434 kb on - strand at 2691.442 kb on - strand at 2691.443 kb on - strand at 2691.443 kb on - strand at 2691.455 kb on - strand at 2691.465 kb on - strand at 2691.498 kb on - strand at 2691.506 kb on + strand at 2691.507 kb on - strand at 2691.507 kb on - strand at 2691.509 kb on - strand at 2691.547 kb on - strand at 2691.567 kb on + strand at 2691.576 kb on + strand at 2691.609 kb on - strand at 2691.609 kb on - strand at 2691.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.01953125 mM remove 2,690,192 + +1.8 2,690,192 + +0.3 2,690,200 - +2.2 2,690,200 - +0.4 2,690,229 + -2.9 2,690,236 + -2.5 2,690,237 - +1.2 2,690,253 + +0.1 2,690,253 + -2.5 2,690,261 - -0.9 2,690,276 - +2.0 2,690,276 - -0.9 2,690,317 - xthA Synpcc7942_2607 0.14 -1.9 2,690,331 - xthA Synpcc7942_2607 0.16 -2.5 2,690,363 - xthA Synpcc7942_2607 0.20 -1.9 2,690,381 - xthA Synpcc7942_2607 0.22 -2.5 2,690,410 - xthA Synpcc7942_2607 0.26 +0.9 2,690,412 + xthA Synpcc7942_2607 0.26 -3.1 2,690,412 + -0.9 2,690,412 + xthA Synpcc7942_2607 0.26 -0.9 2,690,459 + xthA Synpcc7942_2607 0.32 -1.9 2,690,474 - xthA Synpcc7942_2607 0.34 -0.9 2,690,474 - xthA Synpcc7942_2607 0.34 -2.5 2,690,480 + -0.9 2,690,534 + xthA Synpcc7942_2607 0.41 +2.6 2,690,562 - xthA Synpcc7942_2607 0.45 -3.5 2,690,576 + xthA Synpcc7942_2607 0.46 -2.5 2,690,586 + xthA Synpcc7942_2607 0.48 -3.7 2,690,612 + -0.9 2,690,630 - xthA Synpcc7942_2607 0.53 +0.2 2,690,630 - xthA Synpcc7942_2607 0.53 -2.5 2,690,644 + xthA Synpcc7942_2607 0.55 -2.2 2,690,644 + xthA Synpcc7942_2607 0.55 -3.2 2,690,649 + xthA Synpcc7942_2607 0.56 -2.9 2,690,649 + xthA Synpcc7942_2607 0.56 -1.9 2,690,649 + xthA Synpcc7942_2607 0.56 -0.9 2,690,657 - xthA Synpcc7942_2607 0.57 +2.1 2,690,657 - xthA Synpcc7942_2607 0.57 -2.2 2,690,667 - xthA Synpcc7942_2607 0.58 -0.9 2,690,724 - xthA Synpcc7942_2607 0.65 +1.1 2,690,740 + xthA Synpcc7942_2607 0.67 -0.9 2,690,781 - xthA Synpcc7942_2607 0.72 -3.7 2,690,788 - xthA Synpcc7942_2607 0.73 -1.4 2,690,790 + xthA Synpcc7942_2607 0.73 -1.9 2,690,791 - xthA Synpcc7942_2607 0.73 -2.5 2,690,796 - xthA Synpcc7942_2607 0.74 -1.9 2,690,824 + xthA Synpcc7942_2607 0.77 +0.1 2,690,841 + xthA Synpcc7942_2607 0.80 -3.2 2,690,851 + xthA Synpcc7942_2607 0.81 -0.9 2,690,853 - xthA Synpcc7942_2607 0.81 -1.9 2,690,854 - xthA Synpcc7942_2607 0.81 -2.2 2,690,865 - xthA Synpcc7942_2607 0.83 -0.9 2,690,877 - xthA Synpcc7942_2607 0.84 -1.9 2,690,877 - xthA Synpcc7942_2607 0.84 +1.7 2,690,912 - xthA Synpcc7942_2607 0.88 -0.1 2,690,934 + -1.9 2,690,953 - -2.5 2,691,005 - +3.5 2,691,030 + +1.4 2,691,077 - +2.3 2,691,086 + -1.9 2,691,128 - -1.2 2,691,136 + Synpcc7942_2608 0.10 -0.6 2,691,149 - Synpcc7942_2608 0.14 -1.4 2,691,169 - Synpcc7942_2608 0.20 -0.9 2,691,204 + Synpcc7942_2608 0.31 +0.4 2,691,212 - Synpcc7942_2608 0.34 -2.5 2,691,212 - Synpcc7942_2608 0.34 -1.3 2,691,348 - Synpcc7942_2608 0.76 -0.3 2,691,396 - +1.5 2,691,396 - +1.1 2,691,429 - -4.0 2,691,434 + +0.4 2,691,434 - +1.6 2,691,442 - +0.6 2,691,443 - -0.7 2,691,443 - +3.5 2,691,455 - +0.3 2,691,465 - -0.5 2,691,498 - -1.7 2,691,506 + +2.4 2,691,507 - +1.9 2,691,507 - -1.9 2,691,509 - -0.0 2,691,547 - +1.2 2,691,567 + +2.9 2,691,576 + -0.5 2,691,609 - -1.9 2,691,609 - -2.5 2,691,617 + -0.3
Or see this region's nucleotide sequence