Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2539

Experiment: Zinc 0.01953125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclpPIII and clpR are separated by 42 nucleotidesclpR and Synpcc7942_2539 are separated by 141 nucleotidesSynpcc7942_2539 and digB are separated by 189 nucleotidesdigB and rplS are separated by 54 nucleotides Synpcc7942_2537: clpPIII - ATP-dependent Clp protease proteolytic subunit, at 2,619,632 to 2,620,231 clpPIII Synpcc7942_2538: clpR - ATP-dependent Clp protease-like protein, at 2,620,274 to 2,620,960 clpR Synpcc7942_2539: Synpcc7942_2539 - hypothetical protein, at 2,621,102 to 2,621,647 _2539 Synpcc7942_2540: digB - blue-copper-protein-like protein, at 2,621,837 to 2,622,298 digB Synpcc7942_2541: rplS - 50S ribosomal protein L19, at 2,622,353 to 2,622,766 rplS Position (kb) 2621 2622Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2620.994 kb on + strandat 2621.002 kb on - strandat 2621.018 kb on + strandat 2621.033 kb on + strandat 2621.034 kb on + strandat 2621.034 kb on + strandat 2621.034 kb on + strandat 2621.042 kb on - strandat 2621.042 kb on - strandat 2621.062 kb on + strandat 2621.065 kb on + strandat 2621.083 kb on + strandat 2621.088 kb on + strandat 2621.089 kb on + strandat 2621.091 kb on - strandat 2621.091 kb on - strandat 2621.091 kb on - strandat 2621.095 kb on + strandat 2621.095 kb on + strandat 2621.095 kb on + strandat 2621.095 kb on + strandat 2621.097 kb on + strandat 2621.103 kb on - strandat 2621.103 kb on - strandat 2621.103 kb on - strandat 2621.151 kb on + strandat 2621.185 kb on - strand, within Synpcc7942_2539at 2621.185 kb on - strand, within Synpcc7942_2539at 2621.195 kb on + strand, within Synpcc7942_2539at 2621.682 kb on + strandat 2621.690 kb on - strandat 2621.690 kb on - strandat 2621.705 kb on + strandat 2621.710 kb on + strandat 2621.720 kb on + strandat 2621.720 kb on + strandat 2621.728 kb on - strandat 2621.734 kb on + strandat 2621.735 kb on - strandat 2621.742 kb on - strandat 2621.742 kb on - strandat 2621.755 kb on - strandat 2621.755 kb on - strandat 2621.772 kb on - strandat 2621.772 kb on - strandat 2621.772 kb on - strandat 2621.800 kb on + strandat 2621.800 kb on + strandat 2621.818 kb on - strandat 2621.818 kb on - strandat 2621.818 kb on - strandat 2621.852 kb on - strandat 2621.852 kb on - strandat 2621.857 kb on - strandat 2621.859 kb on + strandat 2621.859 kb on + strandat 2621.867 kb on - strandat 2621.878 kb on + strandat 2621.899 kb on + strand, within digBat 2621.938 kb on + strand, within digBat 2621.938 kb on + strand, within digBat 2621.946 kb on + strand, within digBat 2621.946 kb on - strand, within digBat 2621.986 kb on - strandat 2621.999 kb on + strand, within digBat 2622.043 kb on - strand, within digBat 2622.053 kb on - strand, within digBat 2622.061 kb on - strand, within digBat 2622.061 kb on - strand, within digBat 2622.069 kb on + strand, within digBat 2622.074 kb on + strand, within digBat 2622.082 kb on - strand, within digBat 2622.082 kb on - strand, within digBat 2622.087 kb on + strand, within digBat 2622.097 kb on + strand, within digBat 2622.164 kb on + strand, within digBat 2622.175 kb on + strand, within digBat 2622.175 kb on + strand, within digBat 2622.202 kb on - strand, within digBat 2622.215 kb on - strand, within digBat 2622.220 kb on - strand, within digBat 2622.222 kb on + strand, within digBat 2622.230 kb on - strand, within digBat 2622.230 kb on - strand, within digBat 2622.230 kb on - strand, within digBat 2622.250 kb on - strand, within digBat 2622.257 kb on + strandat 2622.265 kb on - strandat 2622.280 kb on + strandat 2622.282 kb on + strandat 2622.282 kb on + strandat 2622.282 kb on + strandat 2622.282 kb on + strandat 2622.282 kb on + strandat 2622.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.01953125 mM
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2,620,994 + +0.9
2,621,002 - -0.3
2,621,018 + +1.6
2,621,033 + -1.4
2,621,034 + +1.7
2,621,034 + +1.7
2,621,034 + +0.7
2,621,042 - -0.0
2,621,042 - -1.9
2,621,062 + +1.8
2,621,065 + +1.8
2,621,083 + +0.4
2,621,088 + +1.1
2,621,089 + +0.1
2,621,091 - +2.1
2,621,091 - +0.1
2,621,091 - +2.6
2,621,095 + -0.9
2,621,095 + +1.1
2,621,095 + -2.5
2,621,095 + -0.3
2,621,097 + +0.8
2,621,103 - +3.2
2,621,103 - -1.6
2,621,103 - +0.8
2,621,151 + +0.1
2,621,185 - Synpcc7942_2539 0.15 -0.1
2,621,185 - Synpcc7942_2539 0.15 -0.9
2,621,195 + Synpcc7942_2539 0.17 -2.5
2,621,682 + +2.0
2,621,690 - +0.1
2,621,690 - +0.1
2,621,705 + -1.9
2,621,710 + +0.1
2,621,720 + -1.0
2,621,720 + +1.8
2,621,728 - -1.7
2,621,734 + -0.1
2,621,735 - +2.4
2,621,742 - -0.9
2,621,742 - -1.1
2,621,755 - +2.0
2,621,755 - -0.6
2,621,772 - -0.6
2,621,772 - +2.2
2,621,772 - +2.1
2,621,800 + -1.1
2,621,800 + +0.1
2,621,818 - +2.7
2,621,818 - +1.4
2,621,818 - +1.3
2,621,852 - +2.1
2,621,852 - +1.1
2,621,857 - +0.9
2,621,859 + +1.4
2,621,859 + -0.9
2,621,867 - +0.0
2,621,878 + +1.6
2,621,899 + digB Synpcc7942_2540 0.13 +0.9
2,621,938 + digB Synpcc7942_2540 0.22 +1.3
2,621,938 + digB Synpcc7942_2540 0.22 +1.1
2,621,946 + digB Synpcc7942_2540 0.24 -0.1
2,621,946 - digB Synpcc7942_2540 0.24 -1.9
2,621,986 - -1.9
2,621,999 + digB Synpcc7942_2540 0.35 +2.8
2,622,043 - digB Synpcc7942_2540 0.45 +1.0
2,622,053 - digB Synpcc7942_2540 0.47 -0.9
2,622,061 - digB Synpcc7942_2540 0.48 +0.1
2,622,061 - digB Synpcc7942_2540 0.48 +3.5
2,622,069 + digB Synpcc7942_2540 0.50 +1.5
2,622,074 + digB Synpcc7942_2540 0.51 +1.7
2,622,082 - digB Synpcc7942_2540 0.53 -1.9
2,622,082 - digB Synpcc7942_2540 0.53 +1.7
2,622,087 + digB Synpcc7942_2540 0.54 -2.5
2,622,097 + digB Synpcc7942_2540 0.56 +1.3
2,622,164 + digB Synpcc7942_2540 0.71 +2.1
2,622,175 + digB Synpcc7942_2540 0.73 +1.1
2,622,175 + digB Synpcc7942_2540 0.73 +2.8
2,622,202 - digB Synpcc7942_2540 0.79 +1.7
2,622,215 - digB Synpcc7942_2540 0.82 -0.9
2,622,220 - digB Synpcc7942_2540 0.83 +1.4
2,622,222 + digB Synpcc7942_2540 0.83 -1.4
2,622,230 - digB Synpcc7942_2540 0.85 -0.9
2,622,230 - digB Synpcc7942_2540 0.85 +2.0
2,622,230 - digB Synpcc7942_2540 0.85 +2.1
2,622,250 - digB Synpcc7942_2540 0.89 +1.2
2,622,257 + +0.5
2,622,265 - +0.9
2,622,280 + +1.5
2,622,282 + +1.4
2,622,282 + -0.9
2,622,282 + +2.2
2,622,282 + -0.9
2,622,282 + -0.9
2,622,290 - +0.4

Or see this region's nucleotide sequence