Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2108

Experiment: Zinc 0.01953125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcynA and Synpcc7942_2108 are separated by 263 nucleotidesSynpcc7942_2108 and Synpcc7942_2109 are separated by 54 nucleotides Synpcc7942_2107: cynA - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like, at 2,186,865 to 2,188,454 cynA Synpcc7942_2108: Synpcc7942_2108 - hypothetical protein, at 2,188,718 to 2,189,086 _2108 Synpcc7942_2109: Synpcc7942_2109 - ATPase, at 2,189,141 to 2,190,916 _2109 Position (kb) 2188 2189 2190Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2187.732 kb on + strand, within cynAat 2187.740 kb on - strand, within cynAat 2187.740 kb on - strand, within cynAat 2187.749 kb on + strand, within cynAat 2187.752 kb on - strand, within cynAat 2187.903 kb on + strand, within cynAat 2187.906 kb on + strand, within cynAat 2187.914 kb on - strand, within cynAat 2187.937 kb on - strand, within cynAat 2187.937 kb on - strand, within cynAat 2187.937 kb on - strand, within cynAat 2188.015 kb on + strand, within cynAat 2188.023 kb on - strand, within cynAat 2188.023 kb on - strand, within cynAat 2188.034 kb on + strand, within cynAat 2188.054 kb on - strand, within cynAat 2188.075 kb on - strand, within cynAat 2188.075 kb on - strand, within cynAat 2188.075 kb on - strand, within cynAat 2188.089 kb on + strand, within cynAat 2188.177 kb on + strand, within cynAat 2188.196 kb on + strand, within cynAat 2188.234 kb on + strand, within cynAat 2188.260 kb on - strand, within cynAat 2188.325 kb on + strandat 2188.340 kb on - strandat 2188.369 kb on + strandat 2188.416 kb on - strandat 2188.426 kb on - strandat 2188.426 kb on - strandat 2188.426 kb on - strandat 2188.438 kb on - strandat 2188.439 kb on + strandat 2188.480 kb on + strandat 2188.487 kb on + strandat 2188.494 kb on - strandat 2188.576 kb on - strandat 2188.585 kb on - strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.591 kb on + strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.599 kb on - strandat 2188.654 kb on - strandat 2188.697 kb on + strandat 2188.703 kb on - strandat 2188.720 kb on - strandat 2188.783 kb on - strand, within Synpcc7942_2108at 2188.788 kb on + strand, within Synpcc7942_2108at 2188.800 kb on + strand, within Synpcc7942_2108at 2188.800 kb on + strand, within Synpcc7942_2108at 2188.800 kb on + strand, within Synpcc7942_2108at 2188.808 kb on - strand, within Synpcc7942_2108at 2188.854 kb on + strand, within Synpcc7942_2108at 2188.854 kb on + strand, within Synpcc7942_2108at 2188.943 kb on + strand, within Synpcc7942_2108at 2188.943 kb on + strand, within Synpcc7942_2108at 2188.951 kb on - strand, within Synpcc7942_2108at 2188.951 kb on - strand, within Synpcc7942_2108at 2188.951 kb on - strand, within Synpcc7942_2108at 2188.951 kb on - strand, within Synpcc7942_2108at 2188.956 kb on - strand, within Synpcc7942_2108at 2188.961 kb on - strand, within Synpcc7942_2108at 2188.968 kb on + strand, within Synpcc7942_2108at 2188.969 kb on + strand, within Synpcc7942_2108at 2188.975 kb on + strand, within Synpcc7942_2108at 2188.983 kb on + strand, within Synpcc7942_2108at 2188.985 kb on + strand, within Synpcc7942_2108at 2188.985 kb on + strand, within Synpcc7942_2108at 2188.997 kb on + strand, within Synpcc7942_2108at 2189.005 kb on - strand, within Synpcc7942_2108at 2189.046 kb on + strand, within Synpcc7942_2108at 2189.046 kb on + strand, within Synpcc7942_2108at 2189.046 kb on + strand, within Synpcc7942_2108at 2189.048 kb on - strand, within Synpcc7942_2108at 2189.054 kb on - strandat 2189.054 kb on - strandat 2189.054 kb on - strandat 2189.056 kb on + strandat 2189.064 kb on - strandat 2189.064 kb on - strandat 2189.079 kb on - strandat 2189.081 kb on + strandat 2189.081 kb on + strandat 2189.088 kb on + strandat 2189.089 kb on - strandat 2189.107 kb on - strandat 2189.114 kb on + strandat 2189.122 kb on - strandat 2189.144 kb on + strandat 2189.148 kb on + strandat 2189.152 kb on - strandat 2189.161 kb on + strandat 2189.202 kb on - strandat 2189.222 kb on - strandat 2189.238 kb on + strandat 2189.238 kb on + strandat 2189.240 kb on - strandat 2189.272 kb on + strandat 2189.272 kb on + strandat 2189.285 kb on - strandat 2189.313 kb on - strandat 2189.356 kb on + strand, within Synpcc7942_2109at 2189.361 kb on + strand, within Synpcc7942_2109at 2189.361 kb on + strand, within Synpcc7942_2109at 2189.379 kb on + strand, within Synpcc7942_2109at 2189.398 kb on + strand, within Synpcc7942_2109at 2189.398 kb on + strand, within Synpcc7942_2109at 2189.398 kb on + strand, within Synpcc7942_2109at 2189.406 kb on - strand, within Synpcc7942_2109at 2189.406 kb on - strand, within Synpcc7942_2109at 2189.406 kb on - strand, within Synpcc7942_2109at 2189.421 kb on + strand, within Synpcc7942_2109at 2189.429 kb on - strand, within Synpcc7942_2109at 2189.486 kb on - strand, within Synpcc7942_2109at 2189.493 kb on + strand, within Synpcc7942_2109at 2189.503 kb on + strand, within Synpcc7942_2109at 2189.503 kb on + strand, within Synpcc7942_2109at 2189.503 kb on + strand, within Synpcc7942_2109at 2189.508 kb on + strand, within Synpcc7942_2109at 2189.508 kb on + strand, within Synpcc7942_2109at 2189.511 kb on - strand, within Synpcc7942_2109at 2189.514 kb on - strand, within Synpcc7942_2109at 2189.524 kb on - strand, within Synpcc7942_2109at 2189.526 kb on + strand, within Synpcc7942_2109at 2189.542 kb on + strandat 2189.559 kb on - strand, within Synpcc7942_2109at 2189.638 kb on + strand, within Synpcc7942_2109at 2189.638 kb on - strand, within Synpcc7942_2109at 2189.640 kb on + strand, within Synpcc7942_2109at 2189.646 kb on + strand, within Synpcc7942_2109at 2189.657 kb on - strand, within Synpcc7942_2109at 2189.720 kb on - strand, within Synpcc7942_2109at 2189.735 kb on - strand, within Synpcc7942_2109at 2189.806 kb on - strand, within Synpcc7942_2109at 2189.845 kb on + strand, within Synpcc7942_2109at 2189.851 kb on - strand, within Synpcc7942_2109at 2190.023 kb on - strand, within Synpcc7942_2109at 2190.046 kb on - strand, within Synpcc7942_2109at 2190.046 kb on - strand, within Synpcc7942_2109at 2190.054 kb on + strand, within Synpcc7942_2109

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.01953125 mM
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2,187,732 + cynA Synpcc7942_2107 0.55 +1.9
2,187,740 - cynA Synpcc7942_2107 0.55 +1.9
2,187,740 - cynA Synpcc7942_2107 0.55 +1.8
2,187,749 + cynA Synpcc7942_2107 0.56 +3.1
2,187,752 - cynA Synpcc7942_2107 0.56 +2.5
2,187,903 + cynA Synpcc7942_2107 0.65 +0.1
2,187,906 + cynA Synpcc7942_2107 0.65 -0.9
2,187,914 - cynA Synpcc7942_2107 0.66 +2.4
2,187,937 - cynA Synpcc7942_2107 0.67 +2.3
2,187,937 - cynA Synpcc7942_2107 0.67 +1.3
2,187,937 - cynA Synpcc7942_2107 0.67 -0.9
2,188,015 + cynA Synpcc7942_2107 0.72 +2.0
2,188,023 - cynA Synpcc7942_2107 0.73 +2.4
2,188,023 - cynA Synpcc7942_2107 0.73 +1.1
2,188,034 + cynA Synpcc7942_2107 0.74 +0.3
2,188,054 - cynA Synpcc7942_2107 0.75 +2.4
2,188,075 - cynA Synpcc7942_2107 0.76 +2.8
2,188,075 - cynA Synpcc7942_2107 0.76 -0.5
2,188,075 - cynA Synpcc7942_2107 0.76 -2.5
2,188,089 + cynA Synpcc7942_2107 0.77 -1.9
2,188,177 + cynA Synpcc7942_2107 0.83 +0.4
2,188,196 + cynA Synpcc7942_2107 0.84 +2.1
2,188,234 + cynA Synpcc7942_2107 0.86 -0.9
2,188,260 - cynA Synpcc7942_2107 0.88 +1.1
2,188,325 + -2.5
2,188,340 - +2.2
2,188,369 + -0.9
2,188,416 - -0.1
2,188,426 - +1.5
2,188,426 - +0.6
2,188,426 - -3.7
2,188,438 - +0.9
2,188,439 + +1.4
2,188,480 + -1.9
2,188,487 + +1.0
2,188,494 - -1.0
2,188,576 - -1.9
2,188,585 - +1.4
2,188,591 + +0.3
2,188,591 + +2.5
2,188,591 + +1.1
2,188,591 + -1.9
2,188,591 + -1.3
2,188,591 + -0.9
2,188,591 + +2.8
2,188,591 + +0.1
2,188,591 + -0.9
2,188,591 + +1.6
2,188,599 - +1.9
2,188,599 - -0.9
2,188,599 - +1.4
2,188,599 - +2.6
2,188,599 - +1.4
2,188,599 - +1.1
2,188,599 - +1.3
2,188,599 - -0.6
2,188,599 - +0.5
2,188,599 - +3.1
2,188,599 - +0.0
2,188,654 - -2.9
2,188,697 + +1.6
2,188,703 - +1.9
2,188,720 - +1.4
2,188,783 - Synpcc7942_2108 0.18 +3.6
2,188,788 + Synpcc7942_2108 0.19 -1.9
2,188,800 + Synpcc7942_2108 0.22 +0.7
2,188,800 + Synpcc7942_2108 0.22 -0.9
2,188,800 + Synpcc7942_2108 0.22 +1.7
2,188,808 - Synpcc7942_2108 0.24 +1.6
2,188,854 + Synpcc7942_2108 0.37 +3.1
2,188,854 + Synpcc7942_2108 0.37 +1.9
2,188,943 + Synpcc7942_2108 0.61 +1.1
2,188,943 + Synpcc7942_2108 0.61 +0.5
2,188,951 - Synpcc7942_2108 0.63 +2.3
2,188,951 - Synpcc7942_2108 0.63 -1.5
2,188,951 - Synpcc7942_2108 0.63 +2.2
2,188,951 - Synpcc7942_2108 0.63 +2.1
2,188,956 - Synpcc7942_2108 0.64 +1.7
2,188,961 - Synpcc7942_2108 0.66 -0.7
2,188,968 + Synpcc7942_2108 0.68 +2.8
2,188,969 + Synpcc7942_2108 0.68 +1.1
2,188,975 + Synpcc7942_2108 0.70 +2.9
2,188,983 + Synpcc7942_2108 0.72 +0.1
2,188,985 + Synpcc7942_2108 0.72 +2.6
2,188,985 + Synpcc7942_2108 0.72 +0.1
2,188,997 + Synpcc7942_2108 0.76 +1.5
2,189,005 - Synpcc7942_2108 0.78 -1.5
2,189,046 + Synpcc7942_2108 0.89 +3.9
2,189,046 + Synpcc7942_2108 0.89 -1.9
2,189,046 + Synpcc7942_2108 0.89 +2.6
2,189,048 - Synpcc7942_2108 0.89 -2.5
2,189,054 - +0.7
2,189,054 - +0.1
2,189,054 - -0.9
2,189,056 + -0.9
2,189,064 - -1.5
2,189,064 - +2.1
2,189,079 - +2.3
2,189,081 + -0.4
2,189,081 + +0.3
2,189,088 + +2.4
2,189,089 - +0.1
2,189,107 - +0.9
2,189,114 + -0.3
2,189,122 - -1.6
2,189,144 + -0.9
2,189,148 + +2.1
2,189,152 - -0.9
2,189,161 + +3.1
2,189,202 - +0.7
2,189,222 - -0.3
2,189,238 + -2.3
2,189,238 + +3.8
2,189,240 - +2.2
2,189,272 + +1.9
2,189,272 + +1.3
2,189,285 - +0.3
2,189,313 - +2.5
2,189,356 + Synpcc7942_2109 0.12 +1.6
2,189,361 + Synpcc7942_2109 0.12 -1.9
2,189,361 + Synpcc7942_2109 0.12 +2.5
2,189,379 + Synpcc7942_2109 0.13 +2.2
2,189,398 + Synpcc7942_2109 0.14 +0.7
2,189,398 + Synpcc7942_2109 0.14 +2.4
2,189,398 + Synpcc7942_2109 0.14 +1.7
2,189,406 - Synpcc7942_2109 0.15 +2.6
2,189,406 - Synpcc7942_2109 0.15 -1.2
2,189,406 - Synpcc7942_2109 0.15 +1.2
2,189,421 + Synpcc7942_2109 0.16 +2.4
2,189,429 - Synpcc7942_2109 0.16 +1.9
2,189,486 - Synpcc7942_2109 0.19 +1.8
2,189,493 + Synpcc7942_2109 0.20 -0.6
2,189,503 + Synpcc7942_2109 0.20 -0.5
2,189,503 + Synpcc7942_2109 0.20 +2.5
2,189,503 + Synpcc7942_2109 0.20 +3.0
2,189,508 + Synpcc7942_2109 0.21 -1.9
2,189,508 + Synpcc7942_2109 0.21 +2.2
2,189,511 - Synpcc7942_2109 0.21 +3.1
2,189,514 - Synpcc7942_2109 0.21 +2.3
2,189,524 - Synpcc7942_2109 0.22 -0.2
2,189,526 + Synpcc7942_2109 0.22 +1.0
2,189,542 + +2.4
2,189,559 - Synpcc7942_2109 0.24 +0.3
2,189,638 + Synpcc7942_2109 0.28 -0.9
2,189,638 - Synpcc7942_2109 0.28 +3.0
2,189,640 + Synpcc7942_2109 0.28 -0.1
2,189,646 + Synpcc7942_2109 0.28 +1.6
2,189,657 - Synpcc7942_2109 0.29 +0.7
2,189,720 - Synpcc7942_2109 0.33 -0.9
2,189,735 - Synpcc7942_2109 0.33 +2.7
2,189,806 - Synpcc7942_2109 0.37 +0.6
2,189,845 + Synpcc7942_2109 0.40 +0.1
2,189,851 - Synpcc7942_2109 0.40 +0.2
2,190,023 - Synpcc7942_2109 0.50 +0.8
2,190,046 - Synpcc7942_2109 0.51 +1.4
2,190,046 - Synpcc7942_2109 0.51 -1.9
2,190,054 + Synpcc7942_2109 0.51 +0.1

Or see this region's nucleotide sequence