Experiment: Zinc 0.01953125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0676 and pex overlap by 38 nucleotides pex and rnd are separated by 304 nucleotides rnd and tRNA-Val are separated by 38 nucleotides tRNA-Val and rbp1 are separated by 272 nucleotides rbp1 and Synpcc7942_0680 are separated by 225 nucleotides
Synpcc7942_0676: Synpcc7942_0676 - hypothetical protein, at 670,914 to 672,119
_0676
Synpcc7942_0677: pex - transcriptional regulator, PadR family, at 672,082 to 672,462
pex
Synpcc7942_0678: rnd - 3'-5' exonuclease, at 672,767 to 673,402
rnd
Synpcc7942_R0038: tRNA-Val - tRNA-Val, at 673,441 to 673,512
tRNA-Val
Synpcc7942_0679: rbp1 - RNA-binding region RNP-1, at 673,785 to 674,108
rbp1
Synpcc7942_0680: Synpcc7942_0680 - C-5 sterol desaturase, at 674,334 to 675,149
_0680
Position (kb) 672
673
674 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 672.181 kb on + strand, within pex at 672.214 kb on + strand, within pex at 672.223 kb on + strand, within pex at 672.245 kb on + strand, within pex at 672.255 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.281 kb on + strand, within pex at 672.283 kb on + strand, within pex at 672.284 kb on - strand, within pex at 672.284 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.289 kb on - strand, within pex at 672.291 kb on - strand, within pex at 672.301 kb on - strand, within pex at 672.303 kb on + strand, within pex at 672.309 kb on + strand, within pex at 672.319 kb on + strand, within pex at 672.322 kb on - strand, within pex at 672.331 kb on + strand, within pex at 672.331 kb on + strand, within pex at 672.345 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.350 kb on - strand, within pex at 672.355 kb on - strand, within pex at 672.385 kb on + strand, within pex at 672.402 kb on - strand, within pex at 672.409 kb on - strand, within pex at 672.411 kb on + strand, within pex at 672.415 kb on + strand, within pex at 672.464 kb on - strand at 672.510 kb on + strand at 672.518 kb on - strand at 672.536 kb on + strand at 672.558 kb on + strand at 672.558 kb on + strand at 672.558 kb on + strand at 672.563 kb on + strand at 672.566 kb on - strand at 672.566 kb on - strand at 672.566 kb on - strand at 672.591 kb on + strand at 672.622 kb on + strand at 672.631 kb on - strand at 672.641 kb on - strand at 672.675 kb on - strand at 672.725 kb on - strand at 672.747 kb on + strand at 672.747 kb on + strand at 672.747 kb on + strand at 672.760 kb on + strand at 672.836 kb on + strand, within rnd at 672.898 kb on + strand, within rnd at 672.898 kb on + strand, within rnd at 672.911 kb on - strand, within rnd at 672.953 kb on + strand, within rnd at 672.967 kb on - strand at 672.999 kb on - strand, within rnd at 673.038 kb on + strand, within rnd at 673.046 kb on + strand, within rnd at 673.066 kb on - strand, within rnd at 673.067 kb on - strand, within rnd at 673.067 kb on - strand, within rnd at 673.117 kb on + strand, within rnd at 673.126 kb on - strand, within rnd at 673.138 kb on - strand, within rnd at 673.157 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.159 kb on - strand, within rnd at 673.167 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.177 kb on + strand, within rnd at 673.185 kb on - strand, within rnd at 673.202 kb on - strand, within rnd at 673.204 kb on + strand, within rnd at 673.212 kb on - strand, within rnd at 673.224 kb on + strand, within rnd at 673.224 kb on + strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.232 kb on - strand, within rnd at 673.237 kb on - strand, within rnd at 673.242 kb on - strand, within rnd at 673.275 kb on - strand, within rnd at 673.303 kb on + strand, within rnd at 673.361 kb on - strand at 673.378 kb on + strand at 673.394 kb on - strand at 673.396 kb on + strand at 673.399 kb on + strand at 673.410 kb on - strand at 673.443 kb on - strand at 673.581 kb on + strand at 673.633 kb on - strand at 673.651 kb on + strand at 673.811 kb on - strand at 673.861 kb on - strand, within rbp1 at 673.862 kb on + strand, within rbp1 at 673.870 kb on - strand, within rbp1 at 673.875 kb on - strand, within rbp1 at 673.952 kb on - strand, within rbp1 at 673.975 kb on + strand, within rbp1 at 673.978 kb on - strand, within rbp1 at 674.020 kb on + strand, within rbp1 at 674.041 kb on - strand, within rbp1 at 674.116 kb on + strand at 674.124 kb on - strand at 674.125 kb on - strand at 674.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 0.01953125 mM remove 672,181 + pex Synpcc7942_0677 0.26 +2.1 672,214 + pex Synpcc7942_0677 0.35 -2.5 672,223 + pex Synpcc7942_0677 0.37 +0.1 672,245 + pex Synpcc7942_0677 0.43 -0.9 672,255 + pex Synpcc7942_0677 0.45 +0.9 672,281 + pex Synpcc7942_0677 0.52 -1.9 672,281 + pex Synpcc7942_0677 0.52 -0.6 672,281 + pex Synpcc7942_0677 0.52 -0.9 672,281 + pex Synpcc7942_0677 0.52 -0.4 672,281 + pex Synpcc7942_0677 0.52 +0.4 672,281 + pex Synpcc7942_0677 0.52 +0.4 672,281 + pex Synpcc7942_0677 0.52 -0.9 672,281 + pex Synpcc7942_0677 0.52 -0.9 672,283 + pex Synpcc7942_0677 0.53 +1.6 672,284 - pex Synpcc7942_0677 0.53 -0.9 672,284 - pex Synpcc7942_0677 0.53 +1.1 672,289 - pex Synpcc7942_0677 0.54 -0.9 672,289 - pex Synpcc7942_0677 0.54 -1.7 672,289 - pex Synpcc7942_0677 0.54 -0.5 672,289 - pex Synpcc7942_0677 0.54 +0.3 672,289 - pex Synpcc7942_0677 0.54 -2.3 672,289 - pex Synpcc7942_0677 0.54 +1.1 672,289 - pex Synpcc7942_0677 0.54 +0.6 672,291 - pex Synpcc7942_0677 0.55 -0.2 672,301 - pex Synpcc7942_0677 0.57 +1.1 672,303 + pex Synpcc7942_0677 0.58 +0.0 672,309 + pex Synpcc7942_0677 0.60 +1.6 672,319 + pex Synpcc7942_0677 0.62 -3.3 672,322 - pex Synpcc7942_0677 0.63 -0.9 672,331 + pex Synpcc7942_0677 0.65 +1.7 672,331 + pex Synpcc7942_0677 0.65 -2.9 672,345 - pex Synpcc7942_0677 0.69 -3.7 672,350 - pex Synpcc7942_0677 0.70 -1.9 672,350 - pex Synpcc7942_0677 0.70 -0.9 672,350 - pex Synpcc7942_0677 0.70 +2.8 672,355 - pex Synpcc7942_0677 0.72 -0.5 672,385 + pex Synpcc7942_0677 0.80 +0.3 672,402 - pex Synpcc7942_0677 0.84 -0.8 672,409 - pex Synpcc7942_0677 0.86 -0.9 672,411 + pex Synpcc7942_0677 0.86 +1.1 672,415 + pex Synpcc7942_0677 0.87 +0.6 672,464 - -0.4 672,510 + -0.9 672,518 - -1.9 672,536 + +1.1 672,558 + +1.6 672,558 + +0.1 672,558 + +0.3 672,563 + -0.4 672,566 - +0.8 672,566 - +0.6 672,566 - -0.9 672,591 + +3.4 672,622 + +0.6 672,631 - -0.9 672,641 - +0.8 672,675 - +0.5 672,725 - -0.4 672,747 + +0.1 672,747 + +1.9 672,747 + -2.5 672,760 + +1.8 672,836 + rnd Synpcc7942_0678 0.11 -3.3 672,898 + rnd Synpcc7942_0678 0.21 -1.9 672,898 + rnd Synpcc7942_0678 0.21 -3.9 672,911 - rnd Synpcc7942_0678 0.23 -1.9 672,953 + rnd Synpcc7942_0678 0.29 -4.9 672,967 - -1.9 672,999 - rnd Synpcc7942_0678 0.36 -1.3 673,038 + rnd Synpcc7942_0678 0.43 -1.5 673,046 + rnd Synpcc7942_0678 0.44 -1.9 673,066 - rnd Synpcc7942_0678 0.47 -0.9 673,067 - rnd Synpcc7942_0678 0.47 -1.9 673,067 - rnd Synpcc7942_0678 0.47 -1.9 673,117 + rnd Synpcc7942_0678 0.55 +0.3 673,126 - rnd Synpcc7942_0678 0.56 +0.8 673,138 - rnd Synpcc7942_0678 0.58 -3.8 673,157 - rnd Synpcc7942_0678 0.61 -0.9 673,159 - rnd Synpcc7942_0678 0.62 +1.2 673,159 - rnd Synpcc7942_0678 0.62 -0.9 673,159 - rnd Synpcc7942_0678 0.62 -3.3 673,167 + rnd Synpcc7942_0678 0.63 -2.9 673,177 + rnd Synpcc7942_0678 0.64 -2.5 673,177 + rnd Synpcc7942_0678 0.64 +2.8 673,177 + rnd Synpcc7942_0678 0.64 -2.5 673,185 - rnd Synpcc7942_0678 0.66 -2.2 673,202 - rnd Synpcc7942_0678 0.68 -0.9 673,204 + rnd Synpcc7942_0678 0.69 -3.3 673,212 - rnd Synpcc7942_0678 0.70 -2.5 673,224 + rnd Synpcc7942_0678 0.72 -1.9 673,224 + rnd Synpcc7942_0678 0.72 -0.9 673,232 - rnd Synpcc7942_0678 0.73 -3.5 673,232 - rnd Synpcc7942_0678 0.73 -3.8 673,232 - rnd Synpcc7942_0678 0.73 -0.4 673,232 - rnd Synpcc7942_0678 0.73 +0.1 673,237 - rnd Synpcc7942_0678 0.74 +0.3 673,242 - rnd Synpcc7942_0678 0.75 -2.5 673,275 - rnd Synpcc7942_0678 0.80 -1.9 673,303 + rnd Synpcc7942_0678 0.84 -2.8 673,361 - -2.5 673,378 + -0.9 673,394 - -1.9 673,396 + +2.0 673,399 + +0.1 673,410 - -0.1 673,443 - +1.8 673,581 + +2.2 673,633 - -0.2 673,651 + -0.2 673,811 - +1.4 673,861 - rbp1 Synpcc7942_0679 0.23 +2.1 673,862 + rbp1 Synpcc7942_0679 0.24 -0.4 673,870 - rbp1 Synpcc7942_0679 0.26 -0.9 673,875 - rbp1 Synpcc7942_0679 0.28 -0.9 673,952 - rbp1 Synpcc7942_0679 0.52 -1.9 673,975 + rbp1 Synpcc7942_0679 0.59 -0.9 673,978 - rbp1 Synpcc7942_0679 0.60 -1.9 674,020 + rbp1 Synpcc7942_0679 0.73 -0.5 674,041 - rbp1 Synpcc7942_0679 0.79 +0.2 674,116 + +1.2 674,124 - +1.6 674,125 - -1.5 674,184 + +0.1
Or see this region's nucleotide sequence