Strain Fitness in Sinorhizobium meliloti 1021 around SMc04090

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04089 and SMc04090 are separated by 167 nucleotidesSMc04090 and SMc04091 overlap by 1 nucleotides SMc04089: SMc04089 - hypothetical protein, at 3,629,899 to 3,631,584 SMc04089 SMc04090: SMc04090 - sun protein, at 3,631,752 to 3,633,164 SMc04090 SMc04091: SMc04091 - heat shock protein HtpX, at 3,633,164 to 3,634,123 SMc04091 Position (kb) 3631 3632 3633 3634Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3631.665 kb on - strandat 3631.665 kb on - strandat 3631.665 kb on - strandat 3631.673 kb on - strandat 3631.694 kb on - strandat 3631.783 kb on + strandat 3632.015 kb on + strand, within SMc04090at 3632.547 kb on + strand, within SMc04090at 3632.590 kb on + strand, within SMc04090at 3632.882 kb on + strand, within SMc04090at 3632.957 kb on - strand, within SMc04090at 3633.150 kb on - strandat 3633.247 kb on + strandat 3633.388 kb on + strand, within SMc04091at 3633.388 kb on + strand, within SMc04091at 3633.388 kb on + strand, within SMc04091at 3633.389 kb on - strand, within SMc04091at 3633.492 kb on - strand, within SMc04091at 3633.492 kb on - strand, within SMc04091at 3633.520 kb on - strand, within SMc04091at 3633.529 kb on + strand, within SMc04091at 3633.529 kb on + strand, within SMc04091at 3633.530 kb on - strand, within SMc04091at 3633.549 kb on - strand, within SMc04091at 3633.762 kb on + strand, within SMc04091at 3633.916 kb on - strand, within SMc04091at 3633.919 kb on - strand, within SMc04091at 3634.059 kb on + strandat 3634.060 kb on - strandat 3634.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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3,631,665 - -1.3
3,631,665 - +0.7
3,631,665 - +0.7
3,631,673 - -1.5
3,631,694 - +0.4
3,631,783 + -1.6
3,632,015 + SMc04090 0.19 -3.0
3,632,547 + SMc04090 0.56 -1.2
3,632,590 + SMc04090 0.59 -0.6
3,632,882 + SMc04090 0.80 -0.7
3,632,957 - SMc04090 0.85 -3.0
3,633,150 - +0.7
3,633,247 + +0.1
3,633,388 + SMc04091 0.23 -1.1
3,633,388 + SMc04091 0.23 +2.1
3,633,388 + SMc04091 0.23 -0.5
3,633,389 - SMc04091 0.23 -1.1
3,633,492 - SMc04091 0.34 -0.3
3,633,492 - SMc04091 0.34 -0.4
3,633,520 - SMc04091 0.37 +0.2
3,633,529 + SMc04091 0.38 -0.0
3,633,529 + SMc04091 0.38 -0.5
3,633,530 - SMc04091 0.38 -0.3
3,633,549 - SMc04091 0.40 -0.1
3,633,762 + SMc04091 0.62 -1.1
3,633,916 - SMc04091 0.78 -0.8
3,633,919 - SMc04091 0.79 +2.2
3,634,059 + -1.1
3,634,060 - -0.6
3,634,060 - -1.4

Or see this region's nucleotide sequence