Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02893 and SMc02894 are separated by 13 nucleotides SMc02894 and SMc02895 are separated by 203 nucleotides
SMc02893: SMc02893 - transcriptional regulator, at 250,422 to 251,348
SMc02893
SMc02894: SMc02894 - hypothetical protein, at 251,362 to 251,631
SMc02894
SMc02895: SMc02895 - hypothetical protein, at 251,835 to 252,779
SMc02895
Position (kb) 251
252 Strain fitness (log2 ratio) -2
-1
0
1
2 at 250.411 kb on - strand at 250.411 kb on - strand at 250.411 kb on - strand at 251.054 kb on + strand, within SMc02893 at 251.054 kb on + strand, within SMc02893 at 251.055 kb on - strand, within SMc02893 at 251.091 kb on - strand, within SMc02893 at 251.099 kb on - strand, within SMc02893 at 251.470 kb on - strand, within SMc02894 at 251.521 kb on - strand, within SMc02894 at 251.537 kb on + strand, within SMc02894 at 251.609 kb on + strand at 251.610 kb on - strand at 251.719 kb on + strand at 251.719 kb on + strand at 251.720 kb on - strand at 251.786 kb on + strand at 251.787 kb on - strand at 251.787 kb on - strand at 251.806 kb on - strand at 251.860 kb on + strand at 251.861 kb on - strand at 252.039 kb on + strand, within SMc02895 at 252.040 kb on - strand, within SMc02895 at 252.163 kb on + strand, within SMc02895 at 252.505 kb on - strand, within SMc02895 at 252.505 kb on - strand, within SMc02895
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 250,411 - +2.0 250,411 - -0.2 250,411 - -0.4 251,054 + SMc02893 0.68 -2.5 251,054 + SMc02893 0.68 +0.5 251,055 - SMc02893 0.68 +0.1 251,091 - SMc02893 0.72 +0.8 251,099 - SMc02893 0.73 +1.0 251,470 - SMc02894 0.40 -1.9 251,521 - SMc02894 0.59 -1.1 251,537 + SMc02894 0.65 +0.8 251,609 + -0.7 251,610 - -1.5 251,719 + +0.2 251,719 + -0.5 251,720 - +0.9 251,786 + +0.4 251,787 - +0.0 251,787 - -0.3 251,806 - +0.2 251,860 + -0.2 251,861 - +0.1 252,039 + SMc02895 0.22 +0.1 252,040 - SMc02895 0.22 +0.9 252,163 + SMc02895 0.35 -0.6 252,505 - SMc02895 0.71 +0.3 252,505 - SMc02895 0.71 +1.0
Or see this region's nucleotide sequence