Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02870 and SMc02871 overlap by 4 nucleotides SMc02871 and SMc02872 are separated by 12 nucleotides SMc02872 and SMc02873 are separated by 268 nucleotides
SMc02870: SMc02870 - oxidoreductase, at 225,791 to 226,855
SMc02870
SMc02871: SMc02871 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 <small>(from data)</small>, at 226,852 to 227,691
SMc02871
SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 <small>(from data)</small>, at 227,704 to 228,651
SMc02872
SMc02873: SMc02873 - N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component <small>(from data)</small>, at 228,920 to 230,179
SMc02873
Position (kb) 227
228
229 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 226.779 kb on + strand at 226.804 kb on + strand at 226.805 kb on - strand at 226.907 kb on + strand at 226.907 kb on + strand at 227.219 kb on - strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.247 kb on - strand, within SMc02871 at 227.272 kb on - strand, within SMc02871 at 227.354 kb on + strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.474 kb on + strand, within SMc02871 at 227.631 kb on - strand at 227.631 kb on - strand at 227.696 kb on + strand at 227.697 kb on - strand at 227.697 kb on - strand at 227.705 kb on + strand at 227.706 kb on - strand at 227.706 kb on - strand at 227.734 kb on + strand at 227.735 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.912 kb on + strand, within SMc02872 at 227.913 kb on - strand, within SMc02872 at 227.913 kb on - strand at 227.913 kb on - strand, within SMc02872 at 228.080 kb on + strand, within SMc02872 at 228.105 kb on + strand, within SMc02872 at 228.106 kb on - strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.291 kb on + strand, within SMc02872 at 228.302 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.507 kb on - strand, within SMc02872 at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.627 kb on - strand at 228.627 kb on - strand at 228.627 kb on - strand at 228.922 kb on - strand at 229.040 kb on - strand at 229.066 kb on - strand, within SMc02873 at 229.185 kb on + strand, within SMc02873 at 229.294 kb on + strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.441 kb on - strand, within SMc02873 at 229.471 kb on - strand, within SMc02873 at 229.575 kb on + strand, within SMc02873 at 229.575 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.651 kb on - strand, within SMc02873
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 226,779 + -3.2 226,804 + -4.2 226,805 - -2.2 226,907 + -2.1 226,907 + -3.0 227,219 - SMc02871 0.44 -2.9 227,246 + SMc02871 0.47 -2.9 227,246 + SMc02871 0.47 -4.2 227,246 + SMc02871 0.47 -3.6 227,247 - SMc02871 0.47 -3.6 227,272 - SMc02871 0.50 -3.9 227,354 + SMc02871 0.60 -3.8 227,355 - SMc02871 0.60 -3.9 227,355 - SMc02871 0.60 -1.7 227,355 - SMc02871 0.60 -1.0 227,474 + SMc02871 0.74 -3.9 227,631 - -3.0 227,631 - -0.8 227,696 + -4.6 227,697 - -4.8 227,697 - -0.5 227,705 + -5.2 227,706 - -2.6 227,706 - -3.1 227,734 + -2.6 227,735 - +0.2 227,748 - -3.9 227,748 - -2.1 227,748 - -1.8 227,912 + SMc02872 0.22 -4.4 227,913 - SMc02872 0.22 -4.1 227,913 - -0.2 227,913 - SMc02872 0.22 -4.1 228,080 + SMc02872 0.40 -0.8 228,105 + SMc02872 0.42 -3.5 228,106 - SMc02872 0.42 -3.3 228,107 + SMc02872 0.43 -3.3 228,107 + SMc02872 0.43 -1.0 228,107 + SMc02872 0.43 -2.9 228,108 - SMc02872 0.43 -1.5 228,108 - SMc02872 0.43 -4.3 228,206 + SMc02872 0.53 -4.9 228,206 + SMc02872 0.53 -5.4 228,207 - SMc02872 0.53 -2.3 228,207 - SMc02872 0.53 +1.8 228,291 + SMc02872 0.62 -3.7 228,302 + SMc02872 0.63 -3.3 228,506 + SMc02872 0.85 -4.3 228,506 + SMc02872 0.85 -3.5 228,506 + SMc02872 0.85 -3.3 228,507 - SMc02872 0.85 -3.7 228,626 + -4.2 228,626 + -3.3 228,626 + -3.4 228,626 + -2.7 228,627 - -1.2 228,627 - -4.0 228,627 - +0.2 228,922 - -2.2 229,040 - -3.9 229,066 - SMc02873 0.12 -4.7 229,185 + SMc02873 0.21 -4.3 229,294 + SMc02873 0.30 -4.5 229,295 - SMc02873 0.30 -1.5 229,295 - SMc02873 0.30 -5.1 229,295 - SMc02873 0.30 -2.4 229,296 + SMc02873 0.30 -3.9 229,296 + SMc02873 0.30 -2.3 229,296 + SMc02873 0.30 -2.6 229,296 + SMc02873 0.30 -1.1 229,296 + SMc02873 0.30 -2.4 229,297 - SMc02873 0.30 -3.9 229,297 - SMc02873 0.30 -2.5 229,297 - SMc02873 0.30 -2.5 229,297 - SMc02873 0.30 -4.2 229,441 - SMc02873 0.41 -4.9 229,471 - SMc02873 0.44 -4.6 229,575 + SMc02873 0.52 -1.8 229,575 + SMc02873 0.52 -3.6 229,650 + SMc02873 0.58 -4.1 229,650 + SMc02873 0.58 -4.7 229,650 + SMc02873 0.58 -4.3 229,650 + SMc02873 0.58 -3.3 229,650 + SMc02873 0.58 -5.2 229,651 - SMc02873 0.58 -4.1 229,651 - SMc02873 0.58 -2.8 229,651 - SMc02873 0.58 -2.1
Or see this region's nucleotide sequence