Strain Fitness in Sinorhizobium meliloti 1021 around SMc02870

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02869 and SMc02870 overlap by 32 nucleotidesSMc02870 and SMc02871 overlap by 4 nucleotidesSMc02871 and SMc02872 are separated by 12 nucleotides SMc02869: SMc02869 - N-Acetyl-D-glucosamine ABC transport system, ATPase component (from data), at 224,764 to 225,822 SMc02869 SMc02870: SMc02870 - oxidoreductase, at 225,791 to 226,855 SMc02870 SMc02871: SMc02871 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 (from data), at 226,852 to 227,691 SMc02871 SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 (from data), at 227,704 to 228,651 SMc02872 Position (kb) 225 226 227Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 224.855 kb on + strandat 224.912 kb on + strand, within SMc02869at 224.912 kb on + strand, within SMc02869at 224.912 kb on + strand, within SMc02869at 224.912 kb on + strand, within SMc02869at 224.912 kb on + strand, within SMc02869at 224.913 kb on - strand, within SMc02869at 225.110 kb on + strand, within SMc02869at 225.110 kb on + strand, within SMc02869at 225.111 kb on - strand, within SMc02869at 225.209 kb on + strand, within SMc02869at 225.209 kb on + strand, within SMc02869at 225.209 kb on + strand, within SMc02869at 225.210 kb on - strand, within SMc02869at 225.210 kb on - strand, within SMc02869at 225.210 kb on - strand, within SMc02869at 225.210 kb on - strand, within SMc02869at 225.399 kb on - strand, within SMc02869at 225.515 kb on + strand, within SMc02869at 225.515 kb on + strand, within SMc02869at 225.516 kb on - strand, within SMc02869at 225.524 kb on + strand, within SMc02869at 225.524 kb on + strand, within SMc02869at 225.524 kb on + strand, within SMc02869at 225.595 kb on + strand, within SMc02869at 225.595 kb on + strand, within SMc02869at 225.792 kb on + strandat 225.793 kb on - strandat 226.171 kb on - strand, within SMc02870at 226.216 kb on - strand, within SMc02870at 226.221 kb on + strand, within SMc02870at 226.221 kb on + strand, within SMc02870at 226.222 kb on - strand, within SMc02870at 226.314 kb on + strand, within SMc02870at 226.314 kb on + strand, within SMc02870at 226.315 kb on - strand, within SMc02870at 226.419 kb on + strand, within SMc02870at 226.419 kb on + strand, within SMc02870at 226.420 kb on - strand, within SMc02870at 226.483 kb on + strand, within SMc02870at 226.483 kb on + strand, within SMc02870at 226.632 kb on + strand, within SMc02870at 226.633 kb on - strand, within SMc02870at 226.633 kb on - strand, within SMc02870at 226.779 kb on + strandat 226.804 kb on + strandat 226.805 kb on - strandat 226.907 kb on + strandat 226.907 kb on + strandat 227.219 kb on - strand, within SMc02871at 227.246 kb on + strand, within SMc02871at 227.246 kb on + strand, within SMc02871at 227.246 kb on + strand, within SMc02871at 227.247 kb on - strand, within SMc02871at 227.272 kb on - strand, within SMc02871at 227.354 kb on + strand, within SMc02871at 227.355 kb on - strand, within SMc02871at 227.355 kb on - strand, within SMc02871at 227.355 kb on - strand, within SMc02871at 227.474 kb on + strand, within SMc02871at 227.631 kb on - strandat 227.631 kb on - strandat 227.696 kb on + strandat 227.697 kb on - strandat 227.697 kb on - strandat 227.705 kb on + strandat 227.706 kb on - strandat 227.706 kb on - strandat 227.734 kb on + strandat 227.735 kb on - strandat 227.748 kb on - strandat 227.748 kb on - strandat 227.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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224,855 + -1.0
224,912 + SMc02869 0.14 -2.5
224,912 + SMc02869 0.14 -3.8
224,912 + SMc02869 0.14 -3.3
224,912 + SMc02869 0.14 -3.6
224,912 + SMc02869 0.14 -5.5
224,913 - SMc02869 0.14 -6.3
225,110 + SMc02869 0.33 -1.7
225,110 + SMc02869 0.33 -2.9
225,111 - SMc02869 0.33 -2.7
225,209 + SMc02869 0.42 -3.8
225,209 + SMc02869 0.42 -2.2
225,209 + SMc02869 0.42 -4.5
225,210 - SMc02869 0.42 -6.0
225,210 - SMc02869 0.42 -4.6
225,210 - SMc02869 0.42 -4.8
225,210 - SMc02869 0.42 -1.4
225,399 - SMc02869 0.60 -4.7
225,515 + SMc02869 0.71 +1.8
225,515 + SMc02869 0.71 -2.7
225,516 - SMc02869 0.71 -3.0
225,524 + SMc02869 0.72 -4.9
225,524 + SMc02869 0.72 -1.0
225,524 + SMc02869 0.72 -3.8
225,595 + SMc02869 0.78 -4.4
225,595 + SMc02869 0.78 -4.2
225,792 + -2.7
225,793 - -1.8
226,171 - SMc02870 0.36 -2.3
226,216 - SMc02870 0.40 -0.8
226,221 + SMc02870 0.40 -4.5
226,221 + SMc02870 0.40 -5.1
226,222 - SMc02870 0.40 -2.4
226,314 + SMc02870 0.49 -2.4
226,314 + SMc02870 0.49 -4.0
226,315 - SMc02870 0.49 -1.5
226,419 + SMc02870 0.59 -2.7
226,419 + SMc02870 0.59 -2.4
226,420 - SMc02870 0.59 -3.1
226,483 + SMc02870 0.65 -1.4
226,483 + SMc02870 0.65 -3.5
226,632 + SMc02870 0.79 -2.6
226,633 - SMc02870 0.79 -3.7
226,633 - SMc02870 0.79 -2.7
226,779 + -3.2
226,804 + -4.2
226,805 - -2.2
226,907 + -2.1
226,907 + -3.0
227,219 - SMc02871 0.44 -2.9
227,246 + SMc02871 0.47 -2.9
227,246 + SMc02871 0.47 -4.2
227,246 + SMc02871 0.47 -3.6
227,247 - SMc02871 0.47 -3.6
227,272 - SMc02871 0.50 -3.9
227,354 + SMc02871 0.60 -3.8
227,355 - SMc02871 0.60 -3.9
227,355 - SMc02871 0.60 -1.7
227,355 - SMc02871 0.60 -1.0
227,474 + SMc02871 0.74 -3.9
227,631 - -3.0
227,631 - -0.8
227,696 + -4.6
227,697 - -4.8
227,697 - -0.5
227,705 + -5.2
227,706 - -2.6
227,706 - -3.1
227,734 + -2.6
227,735 - +0.2
227,748 - -3.9
227,748 - -2.1
227,748 - -1.8

Or see this region's nucleotide sequence