Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02868 and SMc02869 are separated by 476 nucleotides SMc02869 and SMc02870 overlap by 32 nucleotides
SMc02868: SMc02868 - multidrug efflux system protein, at 223,064 to 224,287
SMc02868
SMc02869: SMc02869 - N-Acetyl-D-glucosamine ABC transport system, ATPase component <small>(from data)</small>, at 224,764 to 225,822
SMc02869
SMc02870: SMc02870 - oxidoreductase, at 225,791 to 226,855
SMc02870
Position (kb) 224
225
226 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 223.852 kb on - strand, within SMc02868 at 224.287 kb on + strand at 224.287 kb on + strand at 224.288 kb on - strand at 224.288 kb on - strand at 224.288 kb on - strand at 224.396 kb on - strand at 224.410 kb on - strand at 224.645 kb on - strand at 224.726 kb on + strand at 224.749 kb on + strand at 224.749 kb on + strand at 224.855 kb on + strand at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.913 kb on - strand, within SMc02869 at 225.110 kb on + strand, within SMc02869 at 225.110 kb on + strand, within SMc02869 at 225.111 kb on - strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.399 kb on - strand, within SMc02869 at 225.515 kb on + strand, within SMc02869 at 225.515 kb on + strand, within SMc02869 at 225.516 kb on - strand, within SMc02869 at 225.524 kb on + strand, within SMc02869 at 225.524 kb on + strand, within SMc02869 at 225.524 kb on + strand, within SMc02869 at 225.595 kb on + strand, within SMc02869 at 225.595 kb on + strand, within SMc02869 at 225.792 kb on + strand at 225.793 kb on - strand at 226.171 kb on - strand, within SMc02870 at 226.216 kb on - strand, within SMc02870 at 226.221 kb on + strand, within SMc02870 at 226.221 kb on + strand, within SMc02870 at 226.222 kb on - strand, within SMc02870 at 226.314 kb on + strand, within SMc02870 at 226.314 kb on + strand, within SMc02870 at 226.315 kb on - strand, within SMc02870 at 226.419 kb on + strand, within SMc02870 at 226.419 kb on + strand, within SMc02870 at 226.420 kb on - strand, within SMc02870 at 226.483 kb on + strand, within SMc02870 at 226.483 kb on + strand, within SMc02870 at 226.632 kb on + strand, within SMc02870 at 226.633 kb on - strand, within SMc02870 at 226.633 kb on - strand, within SMc02870 at 226.779 kb on + strand at 226.804 kb on + strand at 226.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 223,852 - SMc02868 0.64 -0.2 224,287 + -0.9 224,287 + -1.9 224,288 - -0.9 224,288 - -0.9 224,288 - -0.0 224,396 - -0.4 224,410 - -0.9 224,645 - -0.5 224,726 + -1.9 224,749 + -3.9 224,749 + -1.9 224,855 + -1.0 224,912 + SMc02869 0.14 -2.5 224,912 + SMc02869 0.14 -3.8 224,912 + SMc02869 0.14 -3.3 224,912 + SMc02869 0.14 -3.6 224,912 + SMc02869 0.14 -5.5 224,913 - SMc02869 0.14 -6.3 225,110 + SMc02869 0.33 -1.7 225,110 + SMc02869 0.33 -2.9 225,111 - SMc02869 0.33 -2.7 225,209 + SMc02869 0.42 -3.8 225,209 + SMc02869 0.42 -2.2 225,209 + SMc02869 0.42 -4.5 225,210 - SMc02869 0.42 -6.0 225,210 - SMc02869 0.42 -4.6 225,210 - SMc02869 0.42 -4.8 225,210 - SMc02869 0.42 -1.4 225,399 - SMc02869 0.60 -4.7 225,515 + SMc02869 0.71 +1.8 225,515 + SMc02869 0.71 -2.7 225,516 - SMc02869 0.71 -3.0 225,524 + SMc02869 0.72 -4.9 225,524 + SMc02869 0.72 -1.0 225,524 + SMc02869 0.72 -3.8 225,595 + SMc02869 0.78 -4.4 225,595 + SMc02869 0.78 -4.2 225,792 + -2.7 225,793 - -1.8 226,171 - SMc02870 0.36 -2.3 226,216 - SMc02870 0.40 -0.8 226,221 + SMc02870 0.40 -4.5 226,221 + SMc02870 0.40 -5.1 226,222 - SMc02870 0.40 -2.4 226,314 + SMc02870 0.49 -2.4 226,314 + SMc02870 0.49 -4.0 226,315 - SMc02870 0.49 -1.5 226,419 + SMc02870 0.59 -2.7 226,419 + SMc02870 0.59 -2.4 226,420 - SMc02870 0.59 -3.1 226,483 + SMc02870 0.65 -1.4 226,483 + SMc02870 0.65 -3.5 226,632 + SMc02870 0.79 -2.6 226,633 - SMc02870 0.79 -3.7 226,633 - SMc02870 0.79 -2.7 226,779 + -3.2 226,804 + -4.2 226,805 - -2.2
Or see this region's nucleotide sequence