Strain Fitness in Sinorhizobium meliloti 1021 around SMc02753

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02755 and SMc02754 are separated by 156 nucleotidesSMc02754 and SMc02753 overlap by 1 nucleotidesSMc02753 and SMc02752 are separated by 280 nucleotidesSMc02752 and SMc04446 overlap by 4 nucleotides SMc02755: SMc02755 - S-adenosyl-L-homocysteine hydrolase, at 46,280 to 47,680 SMc02755 SMc02754: SMc02754 - phosphocarrier HPr, at 47,837 to 48,127 SMc02754 SMc02753: SMc02753 - PTS system transporter subunit IIA, at 48,127 to 48,528 SMc02753 SMc02752: SMc02752 - hypothetical protein, at 48,809 to 49,255 SMc02752 SMc04446: SMc04446 - histidine kinase sensory transmembrane protein, at 49,252 to 51,039 SMc04446 Position (kb) 48 49Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 47.265 kb on + strand, within SMc02755at 47.265 kb on + strand, within SMc02755at 47.265 kb on + strand, within SMc02755at 47.266 kb on - strand, within SMc02755at 47.343 kb on + strand, within SMc02755at 47.344 kb on - strand, within SMc02755at 47.352 kb on + strand, within SMc02755at 47.661 kb on + strandat 47.662 kb on - strandat 47.662 kb on - strandat 47.662 kb on - strandat 47.701 kb on + strandat 47.807 kb on + strandat 47.808 kb on - strandat 47.809 kb on + strandat 47.810 kb on - strandat 47.810 kb on - strandat 47.810 kb on - strandat 47.823 kb on + strandat 47.831 kb on + strandat 48.424 kb on + strand, within SMc02753at 48.533 kb on - strandat 48.551 kb on + strandat 48.686 kb on + strandat 48.686 kb on + strandat 48.687 kb on - strandat 48.745 kb on + strandat 48.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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47,265 + SMc02755 0.70 -0.8
47,265 + SMc02755 0.70 -2.7
47,265 + SMc02755 0.70 -2.4
47,266 - SMc02755 0.70 -3.7
47,343 + SMc02755 0.76 -4.3
47,344 - SMc02755 0.76 -1.5
47,352 + SMc02755 0.77 -3.9
47,661 + -1.2
47,662 - -2.8
47,662 - -2.9
47,662 - -5.0
47,701 + -2.4
47,807 + -1.2
47,808 - +0.2
47,809 + -0.8
47,810 - -1.8
47,810 - -0.7
47,810 - -3.0
47,823 + +1.6
47,831 + +0.4
48,424 + SMc02753 0.74 -1.7
48,533 - +0.6
48,551 + +0.7
48,686 + -2.1
48,686 + -0.1
48,687 - +0.2
48,745 + +0.8
48,751 + +0.7

Or see this region's nucleotide sequence