Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02659 and SMc02658 are separated by 49 nucleotides SMc02658 and SMc02657 overlap by 4 nucleotides SMc02657 and SMc02656 are separated by 131 nucleotides SMc02656 and SMc02655 are separated by 221 nucleotides
SMc02659: SMc02659 - GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein, at 1,164,419 to 1,166,644
SMc02659
SMc02658: SMc02658 - hypothetical protein, at 1,166,694 to 1,166,927
SMc02658
SMc02657: SMc02657 - hypothetical protein, at 1,166,924 to 1,167,208
SMc02657
SMc02656: SMc02656 - hypothetical protein, at 1,167,340 to 1,167,492
SMc02656
SMc02655: SMc02655 - hypothetical protein, at 1,167,714 to 1,168,358
SMc02655
Position (kb)
1166
1167 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1165.877 kb on + strand, within SMc02659 at 1165.877 kb on + strand, within SMc02659 at 1165.877 kb on + strand, within SMc02659 at 1166.312 kb on + strand, within SMc02659 at 1166.312 kb on + strand, within SMc02659 at 1166.494 kb on + strand at 1166.616 kb on + strand at 1166.616 kb on + strand at 1166.616 kb on + strand at 1166.617 kb on - strand at 1166.680 kb on + strand at 1166.681 kb on - strand at 1166.681 kb on - strand at 1166.709 kb on - strand at 1166.759 kb on + strand, within SMc02658 at 1166.900 kb on + strand, within SMc02658 at 1167.050 kb on + strand, within SMc02657 at 1167.050 kb on + strand, within SMc02657 at 1167.051 kb on - strand, within SMc02657 at 1167.302 kb on + strand at 1167.302 kb on + strand at 1167.302 kb on + strand at 1167.303 kb on - strand at 1167.409 kb on + strand, within SMc02656 at 1167.445 kb on + strand, within SMc02656 at 1167.445 kb on + strand, within SMc02656 at 1167.446 kb on - strand, within SMc02656 at 1167.544 kb on + strand at 1167.569 kb on + strand at 1167.569 kb on + strand at 1167.569 kb on + strand at 1167.570 kb on - strand at 1167.603 kb on + strand at 1167.684 kb on + strand at 1167.799 kb on + strand, within SMc02655 at 1167.799 kb on + strand, within SMc02655 at 1167.891 kb on + strand, within SMc02655
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 1,165,877 + SMc02659 0.65 +1.5 1,165,877 + SMc02659 0.65 +0.7 1,165,877 + SMc02659 0.65 -0.8 1,166,312 + SMc02659 0.85 +0.1 1,166,312 + SMc02659 0.85 +1.5 1,166,494 + -0.6 1,166,616 + -0.0 1,166,616 + +1.8 1,166,616 + +1.1 1,166,617 - +1.2 1,166,680 + +0.3 1,166,681 - -0.2 1,166,681 - -0.3 1,166,709 - +0.0 1,166,759 + SMc02658 0.28 -0.3 1,166,900 + SMc02658 0.88 -2.5 1,167,050 + SMc02657 0.44 -0.0 1,167,050 + SMc02657 0.44 +2.7 1,167,051 - SMc02657 0.45 +0.1 1,167,302 + -0.6 1,167,302 + -0.5 1,167,302 + +1.1 1,167,303 - -0.2 1,167,409 + SMc02656 0.45 -0.6 1,167,445 + SMc02656 0.69 +0.0 1,167,445 + SMc02656 0.69 -0.9 1,167,446 - SMc02656 0.69 -0.2 1,167,544 + -0.1 1,167,569 + -0.4 1,167,569 + -0.5 1,167,569 + -0.6 1,167,570 - -1.2 1,167,603 + -0.2 1,167,684 + -0.0 1,167,799 + SMc02655 0.13 +0.7 1,167,799 + SMc02655 0.13 +0.8 1,167,891 + SMc02655 0.27 -1.2
Or see this region's nucleotide sequence