Strain Fitness in Sinorhizobium meliloti 1021 around SMc02658

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02659 and SMc02658 are separated by 49 nucleotidesSMc02658 and SMc02657 overlap by 4 nucleotidesSMc02657 and SMc02656 are separated by 131 nucleotidesSMc02656 and SMc02655 are separated by 221 nucleotides SMc02659: SMc02659 - GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein, at 1,164,419 to 1,166,644 SMc02659 SMc02658: SMc02658 - hypothetical protein, at 1,166,694 to 1,166,927 SMc02658 SMc02657: SMc02657 - hypothetical protein, at 1,166,924 to 1,167,208 SMc02657 SMc02656: SMc02656 - hypothetical protein, at 1,167,340 to 1,167,492 SMc02656 SMc02655: SMc02655 - hypothetical protein, at 1,167,714 to 1,168,358 SMc02655 Position (kb) 1166 1167Strain fitness (log2 ratio) -2 -1 0 1 2at 1165.877 kb on + strand, within SMc02659at 1165.877 kb on + strand, within SMc02659at 1165.877 kb on + strand, within SMc02659at 1166.312 kb on + strand, within SMc02659at 1166.312 kb on + strand, within SMc02659at 1166.494 kb on + strandat 1166.616 kb on + strandat 1166.616 kb on + strandat 1166.616 kb on + strandat 1166.617 kb on - strandat 1166.680 kb on + strandat 1166.681 kb on - strandat 1166.681 kb on - strandat 1166.709 kb on - strandat 1166.759 kb on + strand, within SMc02658at 1166.900 kb on + strand, within SMc02658at 1167.050 kb on + strand, within SMc02657at 1167.050 kb on + strand, within SMc02657at 1167.051 kb on - strand, within SMc02657at 1167.302 kb on + strandat 1167.302 kb on + strandat 1167.302 kb on + strandat 1167.303 kb on - strandat 1167.409 kb on + strand, within SMc02656at 1167.445 kb on + strand, within SMc02656at 1167.445 kb on + strand, within SMc02656at 1167.446 kb on - strand, within SMc02656at 1167.544 kb on + strandat 1167.569 kb on + strandat 1167.569 kb on + strandat 1167.569 kb on + strandat 1167.570 kb on - strandat 1167.603 kb on + strandat 1167.684 kb on + strandat 1167.799 kb on + strand, within SMc02655at 1167.799 kb on + strand, within SMc02655at 1167.891 kb on + strand, within SMc02655

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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1,165,877 + SMc02659 0.65 +1.5
1,165,877 + SMc02659 0.65 +0.7
1,165,877 + SMc02659 0.65 -0.8
1,166,312 + SMc02659 0.85 +0.1
1,166,312 + SMc02659 0.85 +1.5
1,166,494 + -0.6
1,166,616 + -0.0
1,166,616 + +1.8
1,166,616 + +1.1
1,166,617 - +1.2
1,166,680 + +0.3
1,166,681 - -0.2
1,166,681 - -0.3
1,166,709 - +0.0
1,166,759 + SMc02658 0.28 -0.3
1,166,900 + SMc02658 0.88 -2.5
1,167,050 + SMc02657 0.44 -0.0
1,167,050 + SMc02657 0.44 +2.7
1,167,051 - SMc02657 0.45 +0.1
1,167,302 + -0.6
1,167,302 + -0.5
1,167,302 + +1.1
1,167,303 - -0.2
1,167,409 + SMc02656 0.45 -0.6
1,167,445 + SMc02656 0.69 +0.0
1,167,445 + SMc02656 0.69 -0.9
1,167,446 - SMc02656 0.69 -0.2
1,167,544 + -0.1
1,167,569 + -0.4
1,167,569 + -0.5
1,167,569 + -0.6
1,167,570 - -1.2
1,167,603 + -0.2
1,167,684 + -0.0
1,167,799 + SMc02655 0.13 +0.7
1,167,799 + SMc02655 0.13 +0.8
1,167,891 + SMc02655 0.27 -1.2

Or see this region's nucleotide sequence