Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02246 and SMc02247 are separated by 120 nucleotides SMc02247 and SMc02248 are separated by 141 nucleotides SMc02248 and SMc02249 are separated by 156 nucleotides
SMc02246: SMc02246 - hypothetical protein, at 609,621 to 609,968
SMc02246
SMc02247: SMc02247 - signal peptide protein, at 610,089 to 610,526
SMc02247
SMc02248: SMc02248 - transcriptional regulator, at 610,668 to 611,315
SMc02248
SMc02249: SMc02249 - sensory transduction histidine kinase transmembrane protein, at 611,472 to 614,978
SMc02249
Position (kb) 610
611
612 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 609.930 kb on + strand, within SMc02246 at 609.952 kb on + strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.953 kb on - strand at 609.953 kb on - strand at 609.953 kb on - strand at 609.954 kb on + strand at 609.955 kb on - strand at 609.959 kb on + strand at 610.176 kb on + strand, within SMc02247 at 610.596 kb on + strand at 610.596 kb on + strand at 610.597 kb on - strand at 610.597 kb on - strand at 611.187 kb on + strand, within SMc02248 at 611.285 kb on - strand at 611.474 kb on - strand at 611.474 kb on - strand at 611.627 kb on + strand at 612.201 kb on + strand, within SMc02249 at 612.201 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.291 kb on + strand, within SMc02249 at 612.292 kb on - strand, within SMc02249 at 612.294 kb on - strand, within SMc02249
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 609,930 + SMc02246 0.89 -1.5 609,952 + -3.6 609,952 + -3.8 609,952 + -3.5 609,952 + -1.3 609,952 + -4.7 609,953 - -0.4 609,953 - +0.3 609,953 - -1.4 609,954 + -0.3 609,955 - -2.5 609,959 + -1.9 610,176 + SMc02247 0.20 +1.2 610,596 + -0.4 610,596 + -1.0 610,597 - -0.5 610,597 - -0.0 611,187 + SMc02248 0.80 -0.7 611,285 - -0.8 611,474 - -3.0 611,474 - -0.3 611,627 + +0.0 612,201 + SMc02249 0.21 +0.7 612,201 + SMc02249 0.21 +1.4 612,291 + SMc02249 0.23 +0.9 612,291 + SMc02249 0.23 -3.0 612,291 + SMc02249 0.23 -0.6 612,291 + SMc02249 0.23 -0.4 612,291 + SMc02249 0.23 +0.7 612,291 + SMc02249 0.23 +1.3 612,292 - SMc02249 0.23 -0.9 612,294 - SMc02249 0.23 +0.3
Or see this region's nucleotide sequence