Strain Fitness in Sinorhizobium meliloti 1021 around SMc02245

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02244 and SMc02245 overlap by 25 nucleotidesSMc02245 and SMc02246 overlap by 4 nucleotidesSMc02246 and SMc02247 are separated by 120 nucleotides SMc02244: SMc02244 - transmembrane protein, at 607,193 to 608,560 SMc02244 SMc02245: SMc02245 - dihydroorotate dehydrogenase 2, at 608,536 to 609,624 SMc02245 SMc02246: SMc02246 - hypothetical protein, at 609,621 to 609,968 SMc02246 SMc02247: SMc02247 - signal peptide protein, at 610,089 to 610,526 SMc02247 Position (kb) 608 609 610Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 607.552 kb on + strand, within SMc02244at 607.552 kb on + strand, within SMc02244at 607.553 kb on - strand, within SMc02244at 607.553 kb on - strand, within SMc02244at 607.553 kb on - strand, within SMc02244at 607.553 kb on - strand, within SMc02244at 607.553 kb on - strand, within SMc02244at 607.554 kb on + strand, within SMc02244at 607.554 kb on + strand, within SMc02244at 607.555 kb on - strand, within SMc02244at 607.628 kb on + strand, within SMc02244at 607.628 kb on + strand, within SMc02244at 607.628 kb on + strand, within SMc02244at 607.629 kb on - strand, within SMc02244at 607.673 kb on + strand, within SMc02244at 607.674 kb on - strand, within SMc02244at 607.865 kb on + strand, within SMc02244at 607.954 kb on + strand, within SMc02244at 607.955 kb on - strand, within SMc02244at 608.079 kb on - strand, within SMc02244at 608.291 kb on + strand, within SMc02244at 608.291 kb on + strand, within SMc02244at 608.291 kb on + strand, within SMc02244at 608.292 kb on - strand, within SMc02244at 608.292 kb on - strand, within SMc02244at 608.292 kb on - strand, within SMc02244at 608.292 kb on - strand, within SMc02244at 608.292 kb on - strand, within SMc02244at 608.292 kb on - strand, within SMc02244at 608.292 kb on - strand, within SMc02244at 608.292 kb on - strand, within SMc02244at 608.293 kb on + strand, within SMc02244at 608.293 kb on + strand, within SMc02244at 608.293 kb on + strand, within SMc02244at 608.294 kb on - strand, within SMc02244at 608.294 kb on - strand, within SMc02244at 608.578 kb on + strandat 608.579 kb on - strandat 608.678 kb on + strand, within SMc02245at 608.679 kb on - strand, within SMc02245at 609.167 kb on + strand, within SMc02245at 609.167 kb on + strand, within SMc02245at 609.208 kb on - strand, within SMc02245at 609.280 kb on - strand, within SMc02245at 609.930 kb on + strand, within SMc02246at 609.952 kb on + strandat 609.952 kb on + strandat 609.952 kb on + strandat 609.952 kb on + strandat 609.952 kb on + strandat 609.953 kb on - strandat 609.953 kb on - strandat 609.953 kb on - strandat 609.954 kb on + strandat 609.955 kb on - strandat 609.959 kb on + strandat 610.176 kb on + strand, within SMc02247at 610.596 kb on + strandat 610.596 kb on + strandat 610.597 kb on - strandat 610.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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607,552 + SMc02244 0.26 +0.3
607,552 + SMc02244 0.26 -0.3
607,553 - SMc02244 0.26 -0.4
607,553 - SMc02244 0.26 -0.0
607,553 - SMc02244 0.26 +0.5
607,553 - SMc02244 0.26 -0.6
607,553 - SMc02244 0.26 -0.9
607,554 + SMc02244 0.26 -1.1
607,554 + SMc02244 0.26 -1.3
607,555 - SMc02244 0.26 +0.0
607,628 + SMc02244 0.32 -1.4
607,628 + SMc02244 0.32 +0.1
607,628 + SMc02244 0.32 +0.1
607,629 - SMc02244 0.32 -0.1
607,673 + SMc02244 0.35 -0.5
607,674 - SMc02244 0.35 -2.1
607,865 + SMc02244 0.49 -0.5
607,954 + SMc02244 0.56 +0.5
607,955 - SMc02244 0.56 -0.0
608,079 - SMc02244 0.65 -0.5
608,291 + SMc02244 0.80 +0.9
608,291 + SMc02244 0.80 -0.4
608,291 + SMc02244 0.80 +1.0
608,292 - SMc02244 0.80 -0.6
608,292 - SMc02244 0.80 +0.4
608,292 - SMc02244 0.80 -0.2
608,292 - SMc02244 0.80 -0.1
608,292 - SMc02244 0.80 +3.7
608,292 - SMc02244 0.80 -0.1
608,292 - SMc02244 0.80 -0.3
608,292 - SMc02244 0.80 -0.9
608,293 + SMc02244 0.80 +0.6
608,293 + SMc02244 0.80 +0.3
608,293 + SMc02244 0.80 -0.7
608,294 - SMc02244 0.80 -2.0
608,294 - SMc02244 0.80 +0.1
608,578 + -3.2
608,579 - -4.1
608,678 + SMc02245 0.13 -6.1
608,679 - SMc02245 0.13 +1.3
609,167 + SMc02245 0.58 -2.8
609,167 + SMc02245 0.58 -5.3
609,208 - SMc02245 0.62 -2.6
609,280 - SMc02245 0.68 -5.9
609,930 + SMc02246 0.89 -1.5
609,952 + -3.6
609,952 + -3.8
609,952 + -3.5
609,952 + -1.3
609,952 + -4.7
609,953 - -0.4
609,953 - +0.3
609,953 - -1.4
609,954 + -0.3
609,955 - -2.5
609,959 + -1.9
610,176 + SMc02247 0.20 +1.2
610,596 + -0.4
610,596 + -1.0
610,597 - -0.5
610,597 - -0.0

Or see this region's nucleotide sequence