Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02203 and SMc02155 are separated by 158 nucleotides SMc02155 and SMc02154 are separated by 14 nucleotides
SMc02203: SMc02203 - hypothetical protein, at 547,672 to 548,811
SMc02203
SMc02155: SMc02155 - hypothetical protein, at 548,970 to 551,798
SMc02155
SMc02154: SMc02154 - hypothetical protein, at 551,813 to 554,713
SMc02154
Position (kb)
548
549
550
551
552 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 548.097 kb on + strand, within SMc02203 at 548.113 kb on + strand, within SMc02203 at 548.114 kb on - strand, within SMc02203 at 548.114 kb on - strand, within SMc02203 at 548.114 kb on - strand, within SMc02203 at 548.169 kb on - strand, within SMc02203 at 548.263 kb on + strand, within SMc02203 at 548.263 kb on + strand, within SMc02203 at 548.264 kb on - strand, within SMc02203 at 548.310 kb on - strand, within SMc02203 at 548.420 kb on + strand, within SMc02203 at 548.421 kb on - strand, within SMc02203 at 548.564 kb on - strand, within SMc02203 at 548.564 kb on - strand, within SMc02203 at 548.615 kb on + strand, within SMc02203 at 548.674 kb on + strand, within SMc02203 at 548.675 kb on - strand, within SMc02203 at 548.878 kb on - strand at 548.886 kb on + strand at 548.886 kb on + strand at 548.887 kb on - strand at 548.919 kb on - strand at 549.107 kb on + strand at 549.107 kb on + strand at 549.108 kb on - strand at 549.108 kb on - strand at 549.108 kb on - strand at 549.111 kb on + strand at 549.112 kb on - strand at 549.118 kb on - strand at 549.118 kb on - strand at 549.184 kb on + strand at 549.184 kb on + strand at 549.185 kb on - strand at 549.185 kb on - strand at 549.260 kb on - strand, within SMc02155 at 549.532 kb on + strand, within SMc02155 at 549.539 kb on - strand, within SMc02155 at 549.678 kb on + strand, within SMc02155 at 549.782 kb on - strand, within SMc02155 at 549.989 kb on - strand, within SMc02155 at 550.321 kb on + strand, within SMc02155 at 550.322 kb on - strand, within SMc02155 at 550.322 kb on - strand, within SMc02155 at 550.360 kb on + strand, within SMc02155 at 550.360 kb on + strand, within SMc02155 at 550.361 kb on - strand, within SMc02155 at 550.600 kb on + strand, within SMc02155 at 550.603 kb on + strand, within SMc02155 at 550.603 kb on + strand, within SMc02155 at 550.604 kb on - strand, within SMc02155 at 550.604 kb on - strand, within SMc02155 at 550.604 kb on - strand, within SMc02155 at 550.604 kb on - strand, within SMc02155 at 550.604 kb on - strand, within SMc02155 at 550.748 kb on + strand, within SMc02155 at 550.766 kb on - strand, within SMc02155 at 550.799 kb on - strand, within SMc02155 at 550.799 kb on - strand, within SMc02155 at 550.819 kb on + strand, within SMc02155 at 550.819 kb on + strand, within SMc02155 at 550.820 kb on - strand, within SMc02155 at 550.822 kb on + strand, within SMc02155 at 550.823 kb on - strand, within SMc02155 at 550.838 kb on + strand, within SMc02155 at 550.870 kb on + strand, within SMc02155 at 550.871 kb on - strand, within SMc02155 at 550.948 kb on - strand, within SMc02155 at 551.277 kb on - strand, within SMc02155 at 551.350 kb on - strand, within SMc02155 at 551.518 kb on + strand at 551.519 kb on - strand at 551.531 kb on + strand at 551.531 kb on + strand at 551.531 kb on + strand at 551.532 kb on - strand at 551.532 kb on - strand at 551.773 kb on - strand at 551.885 kb on + strand at 551.886 kb on - strand at 551.898 kb on + strand at 551.941 kb on + strand at 551.942 kb on - strand at 551.942 kb on - strand at 551.942 kb on - strand at 552.053 kb on + strand at 552.053 kb on + strand at 552.053 kb on + strand at 552.054 kb on - strand at 552.054 kb on - strand at 552.054 kb on - strand at 552.054 kb on - strand at 552.150 kb on + strand, within SMc02154 at 552.151 kb on - strand, within SMc02154 at 552.151 kb on - strand, within SMc02154 at 552.151 kb on - strand, within SMc02154 at 552.244 kb on - strand, within SMc02154 at 552.313 kb on + strand, within SMc02154 at 552.313 kb on + strand, within SMc02154 at 552.313 kb on + strand, within SMc02154 at 552.372 kb on + strand, within SMc02154 at 552.372 kb on + strand, within SMc02154 at 552.373 kb on - strand, within SMc02154 at 552.406 kb on + strand, within SMc02154 at 552.564 kb on - strand, within SMc02154 at 552.564 kb on - strand, within SMc02154 at 552.615 kb on - strand, within SMc02154 at 552.643 kb on + strand, within SMc02154 at 552.697 kb on + strand, within SMc02154 at 552.697 kb on + strand, within SMc02154 at 552.698 kb on - strand, within SMc02154 at 552.742 kb on - strand, within SMc02154 at 552.744 kb on + strand, within SMc02154 at 552.744 kb on + strand, within SMc02154 at 552.744 kb on + strand, within SMc02154 at 552.744 kb on + strand at 552.744 kb on + strand, within SMc02154 at 552.744 kb on + strand, within SMc02154 at 552.745 kb on - strand, within SMc02154 at 552.745 kb on - strand, within SMc02154 at 552.745 kb on - strand, within SMc02154 at 552.745 kb on - strand, within SMc02154 at 552.748 kb on + strand, within SMc02154 at 552.748 kb on + strand, within SMc02154 at 552.749 kb on - strand, within SMc02154
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 548,097 + SMc02203 0.37 -1.4 548,113 + SMc02203 0.39 -1.6 548,114 - SMc02203 0.39 +0.6 548,114 - SMc02203 0.39 -0.3 548,114 - SMc02203 0.39 -0.5 548,169 - SMc02203 0.44 -0.4 548,263 + SMc02203 0.52 -0.9 548,263 + SMc02203 0.52 -3.1 548,264 - SMc02203 0.52 +0.9 548,310 - SMc02203 0.56 +0.0 548,420 + SMc02203 0.66 +0.9 548,421 - SMc02203 0.66 -0.1 548,564 - SMc02203 0.78 +0.1 548,564 - SMc02203 0.78 -1.8 548,615 + SMc02203 0.83 +2.2 548,674 + SMc02203 0.88 -0.9 548,675 - SMc02203 0.88 -1.6 548,878 - +0.4 548,886 + +0.2 548,886 + +1.1 548,887 - +0.3 548,919 - -1.6 549,107 + -1.0 549,107 + -2.3 549,108 - -0.6 549,108 - -1.1 549,108 - -2.2 549,111 + -1.7 549,112 - +0.0 549,118 - -0.8 549,118 - +0.1 549,184 + -3.4 549,184 + +0.7 549,185 - -1.1 549,185 - -0.9 549,260 - SMc02155 0.10 -4.7 549,532 + SMc02155 0.20 -1.6 549,539 - SMc02155 0.20 -3.2 549,678 + SMc02155 0.25 +0.0 549,782 - SMc02155 0.29 -2.9 549,989 - SMc02155 0.36 -1.5 550,321 + SMc02155 0.48 -0.5 550,322 - SMc02155 0.48 -2.3 550,322 - SMc02155 0.48 -1.0 550,360 + SMc02155 0.49 -0.9 550,360 + SMc02155 0.49 -1.2 550,361 - SMc02155 0.49 -1.1 550,600 + SMc02155 0.58 -0.6 550,603 + SMc02155 0.58 -2.8 550,603 + SMc02155 0.58 +1.7 550,604 - SMc02155 0.58 -3.2 550,604 - SMc02155 0.58 +0.2 550,604 - SMc02155 0.58 -1.1 550,604 - SMc02155 0.58 -2.2 550,604 - SMc02155 0.58 -2.2 550,748 + SMc02155 0.63 -1.3 550,766 - SMc02155 0.63 -2.8 550,799 - SMc02155 0.65 -0.6 550,799 - SMc02155 0.65 -0.3 550,819 + SMc02155 0.65 -2.7 550,819 + SMc02155 0.65 -3.1 550,820 - SMc02155 0.65 -1.8 550,822 + SMc02155 0.65 -1.1 550,823 - SMc02155 0.66 -1.3 550,838 + SMc02155 0.66 -2.7 550,870 + SMc02155 0.67 -3.1 550,871 - SMc02155 0.67 -0.7 550,948 - SMc02155 0.70 -0.6 551,277 - SMc02155 0.82 -0.6 551,350 - SMc02155 0.84 -1.9 551,518 + +0.3 551,519 - -0.3 551,531 + -4.2 551,531 + +1.2 551,531 + -2.5 551,532 - -1.2 551,532 - -1.7 551,773 - -1.4 551,885 + -1.4 551,886 - +0.5 551,898 + -1.9 551,941 + +0.1 551,942 - -0.5 551,942 - -2.3 551,942 - -0.2 552,053 + -0.8 552,053 + -0.6 552,053 + -0.3 552,054 - +0.5 552,054 - +1.8 552,054 - +3.7 552,054 - -0.8 552,150 + SMc02154 0.12 -0.3 552,151 - SMc02154 0.12 +0.8 552,151 - SMc02154 0.12 -1.9 552,151 - SMc02154 0.12 +3.4 552,244 - SMc02154 0.15 +0.2 552,313 + SMc02154 0.17 -0.6 552,313 + SMc02154 0.17 +1.0 552,313 + SMc02154 0.17 -0.5 552,372 + SMc02154 0.19 +0.3 552,372 + SMc02154 0.19 -2.7 552,373 - SMc02154 0.19 -2.9 552,406 + SMc02154 0.20 -0.8 552,564 - SMc02154 0.26 +0.3 552,564 - SMc02154 0.26 -0.2 552,615 - SMc02154 0.28 -2.9 552,643 + SMc02154 0.29 -0.3 552,697 + SMc02154 0.30 +0.2 552,697 + SMc02154 0.30 -0.4 552,698 - SMc02154 0.31 -0.7 552,742 - SMc02154 0.32 -0.6 552,744 + SMc02154 0.32 -0.3 552,744 + SMc02154 0.32 +0.7 552,744 + SMc02154 0.32 -0.2 552,744 + +2.7 552,744 + SMc02154 0.32 -1.9 552,744 + SMc02154 0.32 -0.7 552,745 - SMc02154 0.32 -0.2 552,745 - SMc02154 0.32 -1.8 552,745 - SMc02154 0.32 -0.6 552,745 - SMc02154 0.32 +0.3 552,748 + SMc02154 0.32 -0.4 552,748 + SMc02154 0.32 -3.1 552,749 - SMc02154 0.32 -0.5
Or see this region's nucleotide sequence