Strain Fitness in Sinorhizobium meliloti 1021 around SMc02155

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02203 and SMc02155 are separated by 158 nucleotidesSMc02155 and SMc02154 are separated by 14 nucleotides SMc02203: SMc02203 - hypothetical protein, at 547,672 to 548,811 SMc02203 SMc02155: SMc02155 - hypothetical protein, at 548,970 to 551,798 SMc02155 SMc02154: SMc02154 - hypothetical protein, at 551,813 to 554,713 SMc02154 Position (kb) 548 549 550 551 552Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 548.097 kb on + strand, within SMc02203at 548.113 kb on + strand, within SMc02203at 548.114 kb on - strand, within SMc02203at 548.114 kb on - strand, within SMc02203at 548.114 kb on - strand, within SMc02203at 548.169 kb on - strand, within SMc02203at 548.263 kb on + strand, within SMc02203at 548.263 kb on + strand, within SMc02203at 548.264 kb on - strand, within SMc02203at 548.310 kb on - strand, within SMc02203at 548.420 kb on + strand, within SMc02203at 548.421 kb on - strand, within SMc02203at 548.564 kb on - strand, within SMc02203at 548.564 kb on - strand, within SMc02203at 548.615 kb on + strand, within SMc02203at 548.674 kb on + strand, within SMc02203at 548.675 kb on - strand, within SMc02203at 548.878 kb on - strandat 548.886 kb on + strandat 548.886 kb on + strandat 548.887 kb on - strandat 548.919 kb on - strandat 549.107 kb on + strandat 549.107 kb on + strandat 549.108 kb on - strandat 549.108 kb on - strandat 549.108 kb on - strandat 549.111 kb on + strandat 549.112 kb on - strandat 549.118 kb on - strandat 549.118 kb on - strandat 549.184 kb on + strandat 549.184 kb on + strandat 549.185 kb on - strandat 549.185 kb on - strandat 549.260 kb on - strand, within SMc02155at 549.532 kb on + strand, within SMc02155at 549.539 kb on - strand, within SMc02155at 549.678 kb on + strand, within SMc02155at 549.782 kb on - strand, within SMc02155at 549.989 kb on - strand, within SMc02155at 550.321 kb on + strand, within SMc02155at 550.322 kb on - strand, within SMc02155at 550.322 kb on - strand, within SMc02155at 550.360 kb on + strand, within SMc02155at 550.360 kb on + strand, within SMc02155at 550.361 kb on - strand, within SMc02155at 550.600 kb on + strand, within SMc02155at 550.603 kb on + strand, within SMc02155at 550.603 kb on + strand, within SMc02155at 550.604 kb on - strand, within SMc02155at 550.604 kb on - strand, within SMc02155at 550.604 kb on - strand, within SMc02155at 550.604 kb on - strand, within SMc02155at 550.604 kb on - strand, within SMc02155at 550.748 kb on + strand, within SMc02155at 550.766 kb on - strand, within SMc02155at 550.799 kb on - strand, within SMc02155at 550.799 kb on - strand, within SMc02155at 550.819 kb on + strand, within SMc02155at 550.819 kb on + strand, within SMc02155at 550.820 kb on - strand, within SMc02155at 550.822 kb on + strand, within SMc02155at 550.823 kb on - strand, within SMc02155at 550.838 kb on + strand, within SMc02155at 550.870 kb on + strand, within SMc02155at 550.871 kb on - strand, within SMc02155at 550.948 kb on - strand, within SMc02155at 551.277 kb on - strand, within SMc02155at 551.350 kb on - strand, within SMc02155at 551.518 kb on + strandat 551.519 kb on - strandat 551.531 kb on + strandat 551.531 kb on + strandat 551.531 kb on + strandat 551.532 kb on - strandat 551.532 kb on - strandat 551.773 kb on - strandat 551.885 kb on + strandat 551.886 kb on - strandat 551.898 kb on + strandat 551.941 kb on + strandat 551.942 kb on - strandat 551.942 kb on - strandat 551.942 kb on - strandat 552.053 kb on + strandat 552.053 kb on + strandat 552.053 kb on + strandat 552.054 kb on - strandat 552.054 kb on - strandat 552.054 kb on - strandat 552.054 kb on - strandat 552.150 kb on + strand, within SMc02154at 552.151 kb on - strand, within SMc02154at 552.151 kb on - strand, within SMc02154at 552.151 kb on - strand, within SMc02154at 552.244 kb on - strand, within SMc02154at 552.313 kb on + strand, within SMc02154at 552.313 kb on + strand, within SMc02154at 552.313 kb on + strand, within SMc02154at 552.372 kb on + strand, within SMc02154at 552.372 kb on + strand, within SMc02154at 552.373 kb on - strand, within SMc02154at 552.406 kb on + strand, within SMc02154at 552.564 kb on - strand, within SMc02154at 552.564 kb on - strand, within SMc02154at 552.615 kb on - strand, within SMc02154at 552.643 kb on + strand, within SMc02154at 552.697 kb on + strand, within SMc02154at 552.697 kb on + strand, within SMc02154at 552.698 kb on - strand, within SMc02154at 552.742 kb on - strand, within SMc02154at 552.744 kb on + strand, within SMc02154at 552.744 kb on + strand, within SMc02154at 552.744 kb on + strand, within SMc02154at 552.744 kb on + strandat 552.744 kb on + strand, within SMc02154at 552.744 kb on + strand, within SMc02154at 552.745 kb on - strand, within SMc02154at 552.745 kb on - strand, within SMc02154at 552.745 kb on - strand, within SMc02154at 552.745 kb on - strand, within SMc02154at 552.748 kb on + strand, within SMc02154at 552.748 kb on + strand, within SMc02154at 552.749 kb on - strand, within SMc02154

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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548,097 + SMc02203 0.37 -1.4
548,113 + SMc02203 0.39 -1.6
548,114 - SMc02203 0.39 +0.6
548,114 - SMc02203 0.39 -0.3
548,114 - SMc02203 0.39 -0.5
548,169 - SMc02203 0.44 -0.4
548,263 + SMc02203 0.52 -0.9
548,263 + SMc02203 0.52 -3.1
548,264 - SMc02203 0.52 +0.9
548,310 - SMc02203 0.56 +0.0
548,420 + SMc02203 0.66 +0.9
548,421 - SMc02203 0.66 -0.1
548,564 - SMc02203 0.78 +0.1
548,564 - SMc02203 0.78 -1.8
548,615 + SMc02203 0.83 +2.2
548,674 + SMc02203 0.88 -0.9
548,675 - SMc02203 0.88 -1.6
548,878 - +0.4
548,886 + +0.2
548,886 + +1.1
548,887 - +0.3
548,919 - -1.6
549,107 + -1.0
549,107 + -2.3
549,108 - -0.6
549,108 - -1.1
549,108 - -2.2
549,111 + -1.7
549,112 - +0.0
549,118 - -0.8
549,118 - +0.1
549,184 + -3.4
549,184 + +0.7
549,185 - -1.1
549,185 - -0.9
549,260 - SMc02155 0.10 -4.7
549,532 + SMc02155 0.20 -1.6
549,539 - SMc02155 0.20 -3.2
549,678 + SMc02155 0.25 +0.0
549,782 - SMc02155 0.29 -2.9
549,989 - SMc02155 0.36 -1.5
550,321 + SMc02155 0.48 -0.5
550,322 - SMc02155 0.48 -2.3
550,322 - SMc02155 0.48 -1.0
550,360 + SMc02155 0.49 -0.9
550,360 + SMc02155 0.49 -1.2
550,361 - SMc02155 0.49 -1.1
550,600 + SMc02155 0.58 -0.6
550,603 + SMc02155 0.58 -2.8
550,603 + SMc02155 0.58 +1.7
550,604 - SMc02155 0.58 -3.2
550,604 - SMc02155 0.58 +0.2
550,604 - SMc02155 0.58 -1.1
550,604 - SMc02155 0.58 -2.2
550,604 - SMc02155 0.58 -2.2
550,748 + SMc02155 0.63 -1.3
550,766 - SMc02155 0.63 -2.8
550,799 - SMc02155 0.65 -0.6
550,799 - SMc02155 0.65 -0.3
550,819 + SMc02155 0.65 -2.7
550,819 + SMc02155 0.65 -3.1
550,820 - SMc02155 0.65 -1.8
550,822 + SMc02155 0.65 -1.1
550,823 - SMc02155 0.66 -1.3
550,838 + SMc02155 0.66 -2.7
550,870 + SMc02155 0.67 -3.1
550,871 - SMc02155 0.67 -0.7
550,948 - SMc02155 0.70 -0.6
551,277 - SMc02155 0.82 -0.6
551,350 - SMc02155 0.84 -1.9
551,518 + +0.3
551,519 - -0.3
551,531 + -4.2
551,531 + +1.2
551,531 + -2.5
551,532 - -1.2
551,532 - -1.7
551,773 - -1.4
551,885 + -1.4
551,886 - +0.5
551,898 + -1.9
551,941 + +0.1
551,942 - -0.5
551,942 - -2.3
551,942 - -0.2
552,053 + -0.8
552,053 + -0.6
552,053 + -0.3
552,054 - +0.5
552,054 - +1.8
552,054 - +3.7
552,054 - -0.8
552,150 + SMc02154 0.12 -0.3
552,151 - SMc02154 0.12 +0.8
552,151 - SMc02154 0.12 -1.9
552,151 - SMc02154 0.12 +3.4
552,244 - SMc02154 0.15 +0.2
552,313 + SMc02154 0.17 -0.6
552,313 + SMc02154 0.17 +1.0
552,313 + SMc02154 0.17 -0.5
552,372 + SMc02154 0.19 +0.3
552,372 + SMc02154 0.19 -2.7
552,373 - SMc02154 0.19 -2.9
552,406 + SMc02154 0.20 -0.8
552,564 - SMc02154 0.26 +0.3
552,564 - SMc02154 0.26 -0.2
552,615 - SMc02154 0.28 -2.9
552,643 + SMc02154 0.29 -0.3
552,697 + SMc02154 0.30 +0.2
552,697 + SMc02154 0.30 -0.4
552,698 - SMc02154 0.31 -0.7
552,742 - SMc02154 0.32 -0.6
552,744 + SMc02154 0.32 -0.3
552,744 + SMc02154 0.32 +0.7
552,744 + SMc02154 0.32 -0.2
552,744 + +2.7
552,744 + SMc02154 0.32 -1.9
552,744 + SMc02154 0.32 -0.7
552,745 - SMc02154 0.32 -0.2
552,745 - SMc02154 0.32 -1.8
552,745 - SMc02154 0.32 -0.6
552,745 - SMc02154 0.32 +0.3
552,748 + SMc02154 0.32 -0.4
552,748 + SMc02154 0.32 -3.1
552,749 - SMc02154 0.32 -0.5

Or see this region's nucleotide sequence