Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02145 and SMc02144 overlap by 34 nucleotides SMc02144 and SMc02143 overlap by 4 nucleotides SMc02143 and SMc02142 are separated by 13 nucleotides SMc02142 and SMc02141 are separated by 86 nucleotides
SMc02145: SMc02145 - signal peptide protein, at 567,841 to 568,446
SMc02145
SMc02144: SMc02144 - phosphate ABC transporter permease, at 568,413 to 569,324
SMc02144
SMc02143: SMc02143 - phosphate ABC transporter permease, at 569,321 to 570,643
SMc02143
SMc02142: SMc02142 - phosphate transporter ATP-binding protein, at 570,657 to 571,472
SMc02142
SMc02141: SMc02141 - phosphate transporter PhoU, at 571,559 to 572,272
SMc02141
Position (kb) 569
570
571 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 568.372 kb on - strand, within SMc02145 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.696 kb on - strand, within SMc02144 at 568.696 kb on - strand, within SMc02144 at 569.280 kb on + strand at 569.280 kb on + strand at 569.280 kb on + strand at 569.280 kb on + strand at 569.346 kb on + strand at 569.502 kb on - strand, within SMc02143 at 569.502 kb on - strand, within SMc02143 at 569.601 kb on - strand, within SMc02143 at 569.603 kb on - strand, within SMc02143 at 569.613 kb on - strand, within SMc02143 at 569.641 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.057 kb on - strand, within SMc02143 at 570.509 kb on + strand, within SMc02143 at 570.509 kb on + strand, within SMc02143 at 570.510 kb on - strand, within SMc02143 at 570.510 kb on - strand, within SMc02143 at 570.641 kb on + strand at 570.721 kb on - strand at 570.721 kb on - strand at 570.751 kb on - strand, within SMc02142 at 570.753 kb on + strand, within SMc02142 at 570.934 kb on - strand, within SMc02142 at 570.934 kb on - strand, within SMc02142 at 570.934 kb on - strand, within SMc02142 at 570.934 kb on - strand, within SMc02142 at 571.403 kb on + strand at 571.449 kb on + strand at 571.449 kb on + strand at 571.450 kb on - strand at 571.450 kb on - strand at 571.450 kb on - strand at 571.510 kb on + strand at 571.511 kb on - strand at 571.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 568,372 - SMc02145 0.88 -0.8 568,627 - SMc02144 0.23 -1.7 568,627 - SMc02144 0.23 -2.6 568,627 - SMc02144 0.23 +0.2 568,627 - SMc02144 0.23 -1.4 568,696 - SMc02144 0.31 -1.2 568,696 - SMc02144 0.31 -1.3 569,280 + +1.4 569,280 + +0.9 569,280 + +0.5 569,280 + +0.1 569,346 + -2.6 569,502 - SMc02143 0.14 -2.1 569,502 - SMc02143 0.14 -1.7 569,601 - SMc02143 0.21 -0.9 569,603 - SMc02143 0.21 -2.5 569,613 - SMc02143 0.22 -2.1 569,641 - SMc02143 0.24 -3.1 570,000 - SMc02143 0.51 -0.5 570,000 - SMc02143 0.51 -4.2 570,000 - SMc02143 0.51 -2.9 570,057 - SMc02143 0.56 -1.5 570,509 + SMc02143 0.90 +2.2 570,509 + SMc02143 0.90 -2.2 570,510 - SMc02143 0.90 -3.3 570,510 - SMc02143 0.90 -4.9 570,641 + -1.6 570,721 - -2.5 570,721 - -2.1 570,751 - SMc02142 0.12 -2.3 570,753 + SMc02142 0.12 -1.9 570,934 - SMc02142 0.34 -2.1 570,934 - SMc02142 0.34 -1.8 570,934 - SMc02142 0.34 -1.5 570,934 - SMc02142 0.34 -1.3 571,403 + +0.8 571,449 + +0.2 571,449 + -0.3 571,450 - -0.4 571,450 - -1.5 571,450 - -2.3 571,510 + +0.2 571,511 - -1.9 571,558 + -3.3
Or see this region's nucleotide sequence