Strain Fitness in Sinorhizobium meliloti 1021 around SMc02107

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02109 and SMc02108 are separated by 72 nucleotidesSMc02108 and SMc02107 are separated by 5 nucleotidesSMc02107 and SMc02106 are separated by 253 nucleotidesSMc02106 and SMc02105 are separated by 35 nucleotides SMc02109: SMc02109 - ATP-dependent Clp protease ATP-binding subunit protein, at 1,599,831 to 1,602,347 SMc02109 SMc02108: SMc02108 - hypothetical protein, at 1,602,420 to 1,603,166 SMc02108 SMc02107: SMc02107 - hypothetical protein, at 1,603,172 to 1,603,507 SMc02107 SMc02106: SMc02106 - hypothetical protein, at 1,603,761 to 1,604,180 SMc02106 SMc02105: SMc02105 - hypothetical protein, at 1,604,216 to 1,605,403 SMc02105 Position (kb) 1603 1604Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1602.346 kb on - strandat 1602.384 kb on + strandat 1602.415 kb on - strandat 1602.490 kb on + strandat 1602.508 kb on + strand, within SMc02108at 1602.508 kb on + strand, within SMc02108at 1602.973 kb on - strand, within SMc02108at 1603.017 kb on + strand, within SMc02108at 1603.059 kb on + strand, within SMc02108at 1603.190 kb on + strandat 1603.191 kb on - strandat 1603.343 kb on - strand, within SMc02107at 1603.514 kb on - strandat 1603.525 kb on - strandat 1603.558 kb on + strandat 1603.634 kb on + strandat 1603.762 kb on + strandat 1603.801 kb on - strandat 1603.801 kb on - strandat 1603.801 kb on - strandat 1604.142 kb on + strandat 1604.143 kb on - strandat 1604.143 kb on - strandat 1604.157 kb on - strandat 1604.171 kb on - strandat 1604.308 kb on - strandat 1604.377 kb on - strand, within SMc02105at 1604.445 kb on + strand, within SMc02105at 1604.463 kb on + strand, within SMc02105at 1604.464 kb on - strand, within SMc02105

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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1,602,346 - +0.7
1,602,384 + -2.0
1,602,415 - -3.8
1,602,490 + +0.7
1,602,508 + SMc02108 0.12 +0.1
1,602,508 + SMc02108 0.12 +0.8
1,602,973 - SMc02108 0.74 -0.4
1,603,017 + SMc02108 0.80 -0.0
1,603,059 + SMc02108 0.86 +1.5
1,603,190 + -0.9
1,603,191 - +0.3
1,603,343 - SMc02107 0.51 +0.7
1,603,514 - +0.8
1,603,525 - +0.2
1,603,558 + -0.5
1,603,634 + -0.1
1,603,762 + -0.7
1,603,801 - +0.2
1,603,801 - -1.4
1,603,801 - -0.7
1,604,142 + -0.4
1,604,143 - +0.2
1,604,143 - +1.4
1,604,157 - -1.0
1,604,171 - -0.1
1,604,308 - +0.3
1,604,377 - SMc02105 0.14 -0.3
1,604,445 + SMc02105 0.19 -0.1
1,604,463 + SMc02105 0.21 +0.1
1,604,464 - SMc02105 0.21 +0.4

Or see this region's nucleotide sequence