Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01618 and SMc01619 overlap by 4 nucleotides SMc01619 and SMc01620 are separated by 13 nucleotides
SMc01618: SMc01618 - carbohydrate kinase, at 2,408,272 to 2,409,555
SMc01618
SMc01619: SMc01619 - hypothetical protein, at 2,409,552 to 2,410,607
SMc01619
SMc01620: SMc01620 - glycerol-3-phosphate dehydrogenase, at 2,410,621 to 2,412,135
SMc01620
Position (kb)
2409
2410
2411 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2408.606 kb on + strand, within SMc01618 at 2408.606 kb on + strand, within SMc01618 at 2408.751 kb on - strand, within SMc01618 at 2408.825 kb on - strand, within SMc01618 at 2408.825 kb on - strand, within SMc01618 at 2408.825 kb on - strand, within SMc01618 at 2408.895 kb on + strand, within SMc01618 at 2408.980 kb on + strand, within SMc01618 at 2408.991 kb on + strand, within SMc01618 at 2409.261 kb on + strand, within SMc01618 at 2409.263 kb on + strand, within SMc01618 at 2409.263 kb on + strand, within SMc01618 at 2409.263 kb on + strand, within SMc01618 at 2409.264 kb on - strand, within SMc01618 at 2409.264 kb on - strand, within SMc01618 at 2409.346 kb on + strand, within SMc01618 at 2409.346 kb on + strand, within SMc01618 at 2409.347 kb on - strand, within SMc01618 at 2409.347 kb on - strand, within SMc01618 at 2409.347 kb on - strand, within SMc01618 at 2409.347 kb on - strand, within SMc01618 at 2409.348 kb on + strand, within SMc01618 at 2409.348 kb on + strand, within SMc01618 at 2409.348 kb on + strand, within SMc01618 at 2409.348 kb on + strand, within SMc01618 at 2409.349 kb on - strand, within SMc01618 at 2409.349 kb on - strand, within SMc01618 at 2409.349 kb on - strand, within SMc01618 at 2409.349 kb on - strand, within SMc01618 at 2409.444 kb on + strand at 2410.178 kb on - strand, within SMc01619 at 2410.332 kb on - strand, within SMc01619 at 2410.748 kb on - strand at 2410.748 kb on - strand at 2410.748 kb on - strand at 2410.862 kb on + strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.958 kb on - strand, within SMc01620 at 2411.113 kb on - strand, within SMc01620 at 2411.299 kb on - strand, within SMc01620 at 2411.378 kb on + strand, within SMc01620 at 2411.379 kb on - strand, within SMc01620 at 2411.379 kb on - strand, within SMc01620
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 2,408,606 + SMc01618 0.26 -0.4 2,408,606 + SMc01618 0.26 -0.0 2,408,751 - SMc01618 0.37 -2.3 2,408,825 - SMc01618 0.43 -0.6 2,408,825 - SMc01618 0.43 -0.2 2,408,825 - SMc01618 0.43 -0.2 2,408,895 + SMc01618 0.49 +1.0 2,408,980 + SMc01618 0.55 -0.8 2,408,991 + SMc01618 0.56 +1.9 2,409,261 + SMc01618 0.77 -0.4 2,409,263 + SMc01618 0.77 -0.4 2,409,263 + SMc01618 0.77 +2.4 2,409,263 + SMc01618 0.77 +0.7 2,409,264 - SMc01618 0.77 -0.2 2,409,264 - SMc01618 0.77 +1.1 2,409,346 + SMc01618 0.84 +2.0 2,409,346 + SMc01618 0.84 +0.4 2,409,347 - SMc01618 0.84 -0.4 2,409,347 - SMc01618 0.84 -2.2 2,409,347 - SMc01618 0.84 +0.2 2,409,347 - SMc01618 0.84 +0.4 2,409,348 + SMc01618 0.84 -0.6 2,409,348 + SMc01618 0.84 +1.2 2,409,348 + SMc01618 0.84 +0.2 2,409,348 + SMc01618 0.84 -0.4 2,409,349 - SMc01618 0.84 -0.2 2,409,349 - SMc01618 0.84 +0.4 2,409,349 - SMc01618 0.84 +1.7 2,409,349 - SMc01618 0.84 +0.3 2,409,444 + -1.6 2,410,178 - SMc01619 0.59 -1.4 2,410,332 - SMc01619 0.74 -0.7 2,410,748 - -1.0 2,410,748 - -1.7 2,410,748 - -1.7 2,410,862 + SMc01620 0.16 -0.3 2,410,863 - SMc01620 0.16 +0.1 2,410,863 - SMc01620 0.16 +0.4 2,410,863 - SMc01620 0.16 -0.8 2,410,958 - SMc01620 0.22 -1.6 2,411,113 - SMc01620 0.32 -0.9 2,411,299 - SMc01620 0.45 -3.7 2,411,378 + SMc01620 0.50 -2.5 2,411,379 - SMc01620 0.50 -0.6 2,411,379 - SMc01620 0.50 +1.6
Or see this region's nucleotide sequence