Strain Fitness in Sinorhizobium meliloti 1021 around SMc01124

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01125 and SMc01124 are separated by 101 nucleotidesSMc01124 and SMc01123 overlap by 4 nucleotides SMc01125: SMc01125 - DNA mismatch repair protein MutS, at 426,755 to 429,505 SMc01125 SMc01124: SMc01124 - PII uridylyl-transferase, at 429,607 to 432,456 SMc01124 SMc01123: SMc01123 - virulence factor MviN-like protein, at 432,453 to 434,060 SMc01123 Position (kb) 429 430 431 432 433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 428.846 kb on - strand, within SMc01125at 429.193 kb on - strand, within SMc01125at 429.219 kb on - strand, within SMc01125at 429.219 kb on - strand, within SMc01125at 429.219 kb on - strand, within SMc01125at 429.474 kb on - strandat 429.518 kb on - strandat 429.549 kb on + strandat 429.577 kb on + strandat 429.577 kb on + strandat 430.036 kb on + strand, within SMc01124at 430.036 kb on + strand, within SMc01124at 430.036 kb on + strand, within SMc01124at 430.036 kb on + strand, within SMc01124at 430.036 kb on + strand, within SMc01124at 430.036 kb on + strand, within SMc01124at 430.036 kb on + strand, within SMc01124at 430.150 kb on + strand, within SMc01124at 430.150 kb on + strand, within SMc01124at 430.703 kb on + strand, within SMc01124at 430.703 kb on + strand, within SMc01124at 430.811 kb on + strand, within SMc01124at 430.953 kb on + strand, within SMc01124at 430.955 kb on + strand, within SMc01124at 430.955 kb on + strand, within SMc01124at 431.071 kb on + strand, within SMc01124at 431.071 kb on + strand, within SMc01124at 431.071 kb on + strand, within SMc01124at 431.071 kb on + strand, within SMc01124at 431.388 kb on + strand, within SMc01124at 431.536 kb on + strand, within SMc01124at 431.539 kb on + strand, within SMc01124at 431.539 kb on + strand, within SMc01124at 431.662 kb on + strand, within SMc01124at 431.662 kb on + strand, within SMc01124at 431.686 kb on + strand, within SMc01124at 431.686 kb on + strand, within SMc01124at 431.991 kb on + strand, within SMc01124at 432.117 kb on + strand, within SMc01124at 432.268 kb on + strandat 432.268 kb on + strandat 432.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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428,846 - SMc01125 0.76 -0.0
429,193 - SMc01125 0.89 -0.1
429,219 - SMc01125 0.90 +0.5
429,219 - SMc01125 0.90 -0.5
429,219 - SMc01125 0.90 -2.7
429,474 - +0.1
429,518 - +0.9
429,549 + -1.0
429,577 + -3.0
429,577 + +3.7
430,036 + SMc01124 0.15 -3.4
430,036 + SMc01124 0.15 -4.3
430,036 + SMc01124 0.15 -4.5
430,036 + SMc01124 0.15 -3.9
430,036 + SMc01124 0.15 -4.0
430,036 + SMc01124 0.15 -0.8
430,036 + SMc01124 0.15 -1.2
430,150 + SMc01124 0.19 -2.0
430,150 + SMc01124 0.19 -2.9
430,703 + SMc01124 0.38 +1.3
430,703 + SMc01124 0.38 -1.0
430,811 + SMc01124 0.42 -3.0
430,953 + SMc01124 0.47 -1.5
430,955 + SMc01124 0.47 -2.5
430,955 + SMc01124 0.47 -2.5
431,071 + SMc01124 0.51 -1.7
431,071 + SMc01124 0.51 -4.0
431,071 + SMc01124 0.51 -2.3
431,071 + SMc01124 0.51 -4.5
431,388 + SMc01124 0.62 -2.2
431,536 + SMc01124 0.68 +0.2
431,539 + SMc01124 0.68 -2.5
431,539 + SMc01124 0.68 -3.7
431,662 + SMc01124 0.72 -2.0
431,662 + SMc01124 0.72 -3.7
431,686 + SMc01124 0.73 -2.8
431,686 + SMc01124 0.73 -3.7
431,991 + SMc01124 0.84 +1.2
432,117 + SMc01124 0.88 +2.9
432,268 + -1.1
432,268 + -3.8
432,268 + -4.0

Or see this region's nucleotide sequence