Strain Fitness in Sinorhizobium meliloti 1021 around SMc00917

Experiment: NAG (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00918 and SMc00917 overlap by 4 nucleotidesSMc00917 and SMc00916 are separated by 119 nucleotidesSMc00916 and SMc00915 overlap by 226 nucleotidesSMc00915 and SMc00914 are separated by 87 nucleotides SMc00918: SMc00918 - ATP phosphoribosyltransferase regulatory subunit, at 864,669 to 865,808 SMc00918 SMc00917: SMc00917 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 865,805 to 866,500 SMc00917 SMc00916: SMc00916 - glutathione S-transferase, at 866,620 to 867,363 SMc00916 SMc00915: SMc00915 - hypothetical protein, at 867,138 to 867,329 SMc00915 SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634 SMc00914 Position (kb) 865 866 867Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 864.888 kb on - strand, within SMc00918at 864.919 kb on - strand, within SMc00918at 864.919 kb on - strand, within SMc00918at 864.924 kb on + strand, within SMc00918at 864.924 kb on + strand, within SMc00918at 864.925 kb on - strand, within SMc00918at 864.925 kb on - strand, within SMc00918at 864.972 kb on + strand, within SMc00918at 864.972 kb on + strand, within SMc00918at 865.369 kb on + strand, within SMc00918at 865.370 kb on - strand, within SMc00918at 865.629 kb on + strand, within SMc00918at 865.632 kb on + strand, within SMc00918at 865.632 kb on + strand, within SMc00918at 865.632 kb on + strand, within SMc00918at 865.633 kb on - strand, within SMc00918at 865.633 kb on - strand, within SMc00918at 865.736 kb on + strandat 865.737 kb on - strandat 865.955 kb on + strand, within SMc00917at 865.955 kb on + strand, within SMc00917at 866.129 kb on + strand, within SMc00917at 866.130 kb on - strand, within SMc00917at 866.217 kb on - strand, within SMc00917at 866.217 kb on - strand, within SMc00917at 866.452 kb on + strandat 866.452 kb on + strandat 866.569 kb on + strandat 866.569 kb on + strandat 866.606 kb on + strandat 866.689 kb on + strandat 866.689 kb on + strandat 866.753 kb on - strand, within SMc00916at 866.753 kb on - strand, within SMc00916at 866.905 kb on + strand, within SMc00916at 866.905 kb on + strand, within SMc00916at 866.906 kb on - strand, within SMc00916at 866.906 kb on - strand, within SMc00916at 866.957 kb on - strand, within SMc00916at 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.160 kb on - strandat 867.160 kb on - strandat 867.183 kb on + strandat 867.213 kb on + strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.237 kb on + strandat 867.238 kb on - strandat 867.238 kb on - strandat 867.238 kb on - strandat 867.239 kb on + strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.327 kb on + strandat 867.328 kb on - strandat 867.328 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
remove
864,888 - SMc00918 0.19 -4.9
864,919 - SMc00918 0.22 -4.1
864,919 - SMc00918 0.22 -3.1
864,924 + SMc00918 0.22 -3.5
864,924 + SMc00918 0.22 -6.4
864,925 - SMc00918 0.22 -5.2
864,925 - SMc00918 0.22 -1.8
864,972 + SMc00918 0.27 -2.6
864,972 + SMc00918 0.27 -5.0
865,369 + SMc00918 0.61 -2.1
865,370 - SMc00918 0.61 -2.5
865,629 + SMc00918 0.84 -6.3
865,632 + SMc00918 0.84 -1.7
865,632 + SMc00918 0.84 -5.1
865,632 + SMc00918 0.84 -4.2
865,633 - SMc00918 0.85 -3.2
865,633 - SMc00918 0.85 -5.2
865,736 + -2.3
865,737 - -5.3
865,955 + SMc00917 0.22 -2.7
865,955 + SMc00917 0.22 -1.2
866,129 + SMc00917 0.47 -5.1
866,130 - SMc00917 0.47 -5.6
866,217 - SMc00917 0.59 -5.3
866,217 - SMc00917 0.59 -3.5
866,452 + -4.2
866,452 + -5.5
866,569 + -0.6
866,569 + +0.2
866,606 + -1.1
866,689 + -0.1
866,689 + +0.9
866,753 - SMc00916 0.18 -1.2
866,753 - SMc00916 0.18 -0.1
866,905 + SMc00916 0.38 -1.5
866,905 + SMc00916 0.38 +0.1
866,906 - SMc00916 0.38 -0.3
866,906 - SMc00916 0.38 -0.8
866,957 - SMc00916 0.45 -0.1
867,159 + -0.4
867,159 + -0.1
867,159 + -0.1
867,159 + -0.8
867,159 + -1.1
867,159 + -0.2
867,159 + +0.2
867,160 - +0.4
867,160 - +0.6
867,183 + -0.0
867,213 + +0.4
867,214 - -0.2
867,214 - -0.2
867,237 + -0.5
867,238 - +0.5
867,238 - +1.1
867,238 - +0.2
867,239 + +0.3
867,240 - -0.1
867,240 - -1.0
867,240 - +0.2
867,327 + -0.9
867,328 - -0.6
867,328 - -3.2

Or see this region's nucleotide sequence