Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00815 and SMc00816 are separated by 60 nucleotides SMc00816 and SMc00817 are separated by 114 nucleotides SMc00817 and SMc00818 are separated by 0 nucleotides
SMc00815: SMc00815 - inosine 5'-monophosphate dehydrogenase, at 836,212 to 837,714
SMc00815
SMc00816: SMc00816 - hypothetical protein, at 837,775 to 838,191
SMc00816
SMc00817: SMc00817 - carboxymethylenebutenolidase (dienelactone hydrolase) protein, at 838,306 to 839,181
SMc00817
SMc00818: SMc00818 - hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein), at 839,182 to 840,117
SMc00818
Position (kb) 838
839
840 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 837.448 kb on + strand, within SMc00815 at 837.515 kb on - strand, within SMc00815 at 837.578 kb on - strand at 837.605 kb on - strand at 837.715 kb on + strand at 837.715 kb on + strand at 838.208 kb on - strand at 838.232 kb on + strand at 838.233 kb on - strand at 838.266 kb on - strand at 838.266 kb on - strand at 838.266 kb on - strand at 838.345 kb on + strand at 838.354 kb on + strand at 838.354 kb on + strand at 838.355 kb on - strand at 838.356 kb on + strand at 838.356 kb on + strand at 838.357 kb on - strand at 838.497 kb on + strand, within SMc00817 at 838.498 kb on - strand, within SMc00817 at 838.631 kb on + strand, within SMc00817 at 838.632 kb on - strand, within SMc00817 at 838.632 kb on - strand, within SMc00817 at 838.632 kb on - strand, within SMc00817 at 838.632 kb on - strand, within SMc00817 at 838.632 kb on - strand, within SMc00817 at 838.912 kb on + strand, within SMc00817 at 838.913 kb on - strand, within SMc00817 at 838.913 kb on - strand, within SMc00817 at 838.913 kb on - strand, within SMc00817 at 838.976 kb on - strand, within SMc00817 at 838.976 kb on - strand, within SMc00817 at 839.065 kb on + strand, within SMc00817 at 839.066 kb on - strand, within SMc00817 at 839.506 kb on - strand, within SMc00818 at 839.571 kb on + strand, within SMc00818 at 839.571 kb on + strand, within SMc00818 at 839.636 kb on + strand, within SMc00818 at 839.636 kb on + strand, within SMc00818 at 839.636 kb on + strand, within SMc00818 at 839.637 kb on - strand, within SMc00818 at 839.637 kb on - strand, within SMc00818 at 839.665 kb on - strand, within SMc00818 at 839.768 kb on - strand, within SMc00818 at 839.768 kb on - strand, within SMc00818 at 839.768 kb on - strand, within SMc00818 at 839.799 kb on - strand, within SMc00818 at 839.822 kb on + strand, within SMc00818 at 839.823 kb on - strand, within SMc00818 at 839.823 kb on - strand, within SMc00818 at 839.878 kb on - strand, within SMc00818 at 840.110 kb on + strand at 840.111 kb on - strand at 840.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 837,448 + SMc00815 0.82 -2.8 837,515 - SMc00815 0.87 -2.6 837,578 - -1.9 837,605 - -3.7 837,715 + -0.8 837,715 + -2.0 838,208 - -0.2 838,232 + -0.5 838,233 - -0.5 838,266 - -3.3 838,266 - -2.0 838,266 - -1.8 838,345 + -0.1 838,354 + -0.5 838,354 + -0.4 838,355 - +0.2 838,356 + -0.1 838,356 + +0.4 838,357 - +1.0 838,497 + SMc00817 0.22 -2.2 838,498 - SMc00817 0.22 -0.5 838,631 + SMc00817 0.37 -0.4 838,632 - SMc00817 0.37 -0.6 838,632 - SMc00817 0.37 -2.0 838,632 - SMc00817 0.37 -0.3 838,632 - SMc00817 0.37 -0.6 838,632 - SMc00817 0.37 -1.0 838,912 + SMc00817 0.69 -0.5 838,913 - SMc00817 0.69 -1.8 838,913 - SMc00817 0.69 -1.9 838,913 - SMc00817 0.69 +0.5 838,976 - SMc00817 0.76 +0.1 838,976 - SMc00817 0.76 +0.3 839,065 + SMc00817 0.87 -0.6 839,066 - SMc00817 0.87 +1.2 839,506 - SMc00818 0.35 +1.7 839,571 + SMc00818 0.42 -0.5 839,571 + SMc00818 0.42 +0.3 839,636 + SMc00818 0.49 -0.1 839,636 + SMc00818 0.49 -2.0 839,636 + SMc00818 0.49 +0.3 839,637 - SMc00818 0.49 -0.6 839,637 - SMc00818 0.49 -0.6 839,665 - SMc00818 0.52 +0.4 839,768 - SMc00818 0.63 +1.1 839,768 - SMc00818 0.63 +0.4 839,768 - SMc00818 0.63 +0.2 839,799 - SMc00818 0.66 -0.3 839,822 + SMc00818 0.68 -0.8 839,823 - SMc00818 0.68 +0.1 839,823 - SMc00818 0.68 -4.7 839,878 - SMc00818 0.74 +0.9 840,110 + -1.3 840,111 - +0.1 840,111 - +0.2
Or see this region's nucleotide sequence