Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00074 and SMc00075 overlap by 1 nucleotides SMc00075 and SMc00451 are separated by 271 nucleotides SMc00451 and SMc00077 are separated by 18 nucleotides
SMc00074: SMc00074 - transmembrane signal peptide protein, at 1,003,924 to 1,006,836
SMc00074
SMc00075: SMc00075 - ribosomal-protein-alanine acetyltransferase, at 1,006,836 to 1,007,447
SMc00075
SMc00451: SMc00451 - processing protease, at 1,007,719 to 1,009,017
SMc00451
SMc00077: SMc00077 - threonine synthase, at 1,009,036 to 1,010,436
SMc00077
Position (kb)
1007
1008
1009
1010 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1006.925 kb on - strand, within SMc00075 at 1006.925 kb on - strand, within SMc00075 at 1006.937 kb on - strand, within SMc00075 at 1007.042 kb on - strand, within SMc00075 at 1007.069 kb on - strand, within SMc00075 at 1007.069 kb on - strand, within SMc00075 at 1007.073 kb on - strand, within SMc00075 at 1007.381 kb on - strand, within SMc00075 at 1007.450 kb on - strand at 1007.450 kb on - strand at 1007.450 kb on - strand at 1007.669 kb on - strand at 1007.737 kb on + strand at 1007.770 kb on + strand at 1007.771 kb on - strand at 1008.254 kb on + strand, within SMc00451 at 1008.254 kb on + strand, within SMc00451 at 1008.255 kb on - strand, within SMc00451 at 1008.477 kb on + strand, within SMc00451 at 1008.478 kb on - strand, within SMc00451 at 1008.478 kb on - strand, within SMc00451 at 1008.480 kb on - strand, within SMc00451 at 1008.480 kb on - strand, within SMc00451 at 1008.576 kb on - strand, within SMc00451 at 1008.755 kb on + strand, within SMc00451 at 1008.758 kb on + strand, within SMc00451 at 1008.758 kb on + strand, within SMc00451 at 1008.758 kb on + strand, within SMc00451 at 1008.759 kb on - strand, within SMc00451 at 1009.054 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 1,006,925 - SMc00075 0.15 -0.3 1,006,925 - SMc00075 0.15 +0.1 1,006,937 - SMc00075 0.17 -0.1 1,007,042 - SMc00075 0.34 +0.4 1,007,069 - SMc00075 0.38 -0.0 1,007,069 - SMc00075 0.38 +0.3 1,007,073 - SMc00075 0.39 +2.5 1,007,381 - SMc00075 0.89 +0.4 1,007,450 - -2.6 1,007,450 - -0.1 1,007,450 - +0.4 1,007,669 - -0.6 1,007,737 + -3.7 1,007,770 + +1.5 1,007,771 - -0.1 1,008,254 + SMc00451 0.41 -1.3 1,008,254 + SMc00451 0.41 -2.8 1,008,255 - SMc00451 0.41 -4.9 1,008,477 + SMc00451 0.58 -0.4 1,008,478 - SMc00451 0.58 +0.6 1,008,478 - SMc00451 0.58 -1.6 1,008,480 - SMc00451 0.59 +1.1 1,008,480 - SMc00451 0.59 -3.9 1,008,576 - SMc00451 0.66 -0.3 1,008,755 + SMc00451 0.80 -3.8 1,008,758 + SMc00451 0.80 -1.2 1,008,758 + SMc00451 0.80 -2.1 1,008,758 + SMc00451 0.80 -0.8 1,008,759 - SMc00451 0.80 -1.7 1,009,054 - +1.5
Or see this region's nucleotide sequence