Strain Fitness in Sinorhizobium meliloti 1021 around SMc00063

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00062 and SMc00063 are separated by 154 nucleotidesSMc00063 and SMc00128 are separated by 565 nucleotides SMc00062: SMc00062 - hypothetical protein, at 1,098,050 to 1,098,685 SMc00062 SMc00063: SMc00063 - hypothetical protein, at 1,098,840 to 1,099,124 SMc00063 SMc00128: SMc00128 - hypothetical protein, at 1,099,690 to 1,100,235 SMc00128 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -2 -1 0 1at 1097.841 kb on - strandat 1097.866 kb on - strandat 1097.870 kb on - strandat 1097.870 kb on - strandat 1097.886 kb on + strandat 1097.945 kb on + strandat 1097.952 kb on - strandat 1098.154 kb on + strand, within SMc00062at 1098.158 kb on + strand, within SMc00062at 1098.158 kb on + strand, within SMc00062at 1098.159 kb on - strandat 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.159 kb on - strand, within SMc00062at 1098.162 kb on - strand, within SMc00062at 1098.249 kb on - strand, within SMc00062at 1098.278 kb on + strand, within SMc00062at 1098.278 kb on + strand, within SMc00062at 1098.312 kb on - strand, within SMc00062at 1098.312 kb on - strand, within SMc00062at 1098.326 kb on + strand, within SMc00062at 1098.329 kb on + strand, within SMc00062at 1098.330 kb on - strand, within SMc00062at 1098.374 kb on + strand, within SMc00062at 1098.375 kb on - strand, within SMc00062at 1098.390 kb on - strand, within SMc00062at 1098.626 kb on + strandat 1098.812 kb on - strandat 1099.374 kb on - strandat 1099.378 kb on + strandat 1099.379 kb on - strandat 1099.400 kb on + strandat 1099.400 kb on + strandat 1099.423 kb on + strandat 1099.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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1,097,841 - -0.2
1,097,866 - -0.0
1,097,870 - -0.6
1,097,870 - -0.0
1,097,886 + -1.5
1,097,945 + +0.4
1,097,952 - -0.5
1,098,154 + SMc00062 0.16 +0.2
1,098,158 + SMc00062 0.17 -0.3
1,098,158 + SMc00062 0.17 +0.4
1,098,159 - +1.0
1,098,159 - SMc00062 0.17 -0.1
1,098,159 - SMc00062 0.17 +0.8
1,098,159 - SMc00062 0.17 +0.4
1,098,159 - SMc00062 0.17 +0.1
1,098,159 - SMc00062 0.17 -0.4
1,098,159 - SMc00062 0.17 -1.0
1,098,159 - SMc00062 0.17 -0.7
1,098,159 - SMc00062 0.17 +1.6
1,098,159 - SMc00062 0.17 +1.2
1,098,159 - SMc00062 0.17 -1.7
1,098,162 - SMc00062 0.18 +0.2
1,098,249 - SMc00062 0.31 +0.7
1,098,278 + SMc00062 0.36 -0.1
1,098,278 + SMc00062 0.36 +1.4
1,098,312 - SMc00062 0.41 -0.5
1,098,312 - SMc00062 0.41 +1.1
1,098,326 + SMc00062 0.43 -0.7
1,098,329 + SMc00062 0.44 -0.9
1,098,330 - SMc00062 0.44 +1.4
1,098,374 + SMc00062 0.51 -0.5
1,098,375 - SMc00062 0.51 +0.5
1,098,390 - SMc00062 0.53 -2.4
1,098,626 + +0.0
1,098,812 - +0.1
1,099,374 - +0.7
1,099,378 + +0.2
1,099,379 - +0.9
1,099,400 + +1.1
1,099,400 + +0.8
1,099,423 + -1.9
1,099,692 - -1.0

Or see this region's nucleotide sequence