Strain Fitness in Sinorhizobium meliloti 1021 around SMa2303

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2301 and SMa2303 are separated by 83 nucleotidesSMa2303 and SMa2305 are separated by 177 nucleotides SMa2301: SMa2301 - Diguanylate cyclase, at 1,281,993 to 1,283,339 SMa2301 SMa2303: SMa2303 - ROK family transcriptional regulator, at 1,283,423 to 1,284,649 SMa2303 SMa2305: SMa2305 - ABC transporter substrate-binding protein, at 1,284,827 to 1,286,095 SMa2305 Position (kb) 1283 1284 1285Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1282.616 kb on + strand, within SMa2301at 1282.616 kb on + strand, within SMa2301at 1282.720 kb on + strand, within SMa2301at 1282.720 kb on + strand, within SMa2301at 1282.721 kb on - strand, within SMa2301at 1282.828 kb on + strand, within SMa2301at 1282.829 kb on - strand, within SMa2301at 1282.893 kb on - strand, within SMa2301at 1283.043 kb on + strand, within SMa2301at 1283.044 kb on - strand, within SMa2301at 1283.064 kb on + strand, within SMa2301at 1283.064 kb on + strand, within SMa2301at 1283.065 kb on - strand, within SMa2301at 1283.212 kb on + strandat 1283.413 kb on + strandat 1283.414 kb on - strandat 1283.457 kb on - strandat 1283.619 kb on - strand, within SMa2303at 1283.806 kb on - strand, within SMa2303at 1283.812 kb on + strand, within SMa2303at 1283.812 kb on + strand, within SMa2303at 1283.812 kb on + strand, within SMa2303at 1283.812 kb on + strand, within SMa2303at 1283.812 kb on + strand, within SMa2303at 1283.812 kb on + strand, within SMa2303at 1283.812 kb on + strand, within SMa2303at 1283.813 kb on - strand, within SMa2303at 1283.813 kb on - strand, within SMa2303at 1283.813 kb on - strand, within SMa2303at 1283.813 kb on - strand, within SMa2303at 1283.813 kb on - strand, within SMa2303at 1283.857 kb on + strand, within SMa2303at 1283.857 kb on + strand, within SMa2303at 1283.857 kb on + strand, within SMa2303at 1283.858 kb on - strand, within SMa2303at 1283.911 kb on + strand, within SMa2303at 1283.912 kb on - strand, within SMa2303at 1283.936 kb on + strand, within SMa2303at 1283.937 kb on - strand, within SMa2303at 1283.973 kb on + strand, within SMa2303at 1283.974 kb on - strandat 1283.974 kb on - strand, within SMa2303at 1283.974 kb on - strand, within SMa2303at 1283.974 kb on - strand, within SMa2303at 1283.974 kb on - strand, within SMa2303at 1284.080 kb on + strand, within SMa2303at 1284.080 kb on + strand, within SMa2303at 1284.081 kb on - strand, within SMa2303at 1284.097 kb on - strandat 1284.148 kb on + strand, within SMa2303at 1284.149 kb on - strand, within SMa2303at 1284.149 kb on - strand, within SMa2303at 1284.293 kb on + strand, within SMa2303at 1284.294 kb on - strand, within SMa2303at 1284.306 kb on - strand, within SMa2303at 1284.306 kb on - strand, within SMa2303at 1284.541 kb on + strandat 1284.644 kb on - strandat 1284.649 kb on + strandat 1284.649 kb on + strandat 1284.708 kb on + strandat 1284.821 kb on + strandat 1284.821 kb on + strandat 1284.866 kb on - strandat 1285.048 kb on + strand, within SMa2305at 1285.199 kb on + strand, within SMa2305at 1285.199 kb on + strand, within SMa2305at 1285.254 kb on - strand, within SMa2305at 1285.292 kb on + strand, within SMa2305at 1285.456 kb on + strand, within SMa2305at 1285.456 kb on + strand, within SMa2305at 1285.456 kb on + strand, within SMa2305at 1285.505 kb on + strand, within SMa2305at 1285.582 kb on + strand, within SMa2305at 1285.582 kb on + strand, within SMa2305at 1285.582 kb on + strand, within SMa2305

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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1,282,616 + SMa2301 0.46 -1.0
1,282,616 + SMa2301 0.46 +0.6
1,282,720 + SMa2301 0.54 -0.6
1,282,720 + SMa2301 0.54 +0.4
1,282,721 - SMa2301 0.54 -1.9
1,282,828 + SMa2301 0.62 +0.3
1,282,829 - SMa2301 0.62 -0.3
1,282,893 - SMa2301 0.67 -0.4
1,283,043 + SMa2301 0.78 +2.6
1,283,044 - SMa2301 0.78 +2.2
1,283,064 + SMa2301 0.80 -0.3
1,283,064 + SMa2301 0.80 +0.0
1,283,065 - SMa2301 0.80 +0.4
1,283,212 + +0.8
1,283,413 + -0.5
1,283,414 - +0.2
1,283,457 - -0.8
1,283,619 - SMa2303 0.16 +0.2
1,283,806 - SMa2303 0.31 +0.8
1,283,812 + SMa2303 0.32 -1.4
1,283,812 + SMa2303 0.32 -1.0
1,283,812 + SMa2303 0.32 -0.2
1,283,812 + SMa2303 0.32 -1.0
1,283,812 + SMa2303 0.32 -0.0
1,283,812 + SMa2303 0.32 -0.4
1,283,812 + SMa2303 0.32 -0.1
1,283,813 - SMa2303 0.32 +1.3
1,283,813 - SMa2303 0.32 -1.0
1,283,813 - SMa2303 0.32 -1.5
1,283,813 - SMa2303 0.32 -0.3
1,283,813 - SMa2303 0.32 +0.7
1,283,857 + SMa2303 0.35 -0.9
1,283,857 + SMa2303 0.35 -0.4
1,283,857 + SMa2303 0.35 -0.1
1,283,858 - SMa2303 0.35 +4.4
1,283,911 + SMa2303 0.40 -2.8
1,283,912 - SMa2303 0.40 +1.2
1,283,936 + SMa2303 0.42 +0.0
1,283,937 - SMa2303 0.42 -0.6
1,283,973 + SMa2303 0.45 +0.5
1,283,974 - -0.5
1,283,974 - SMa2303 0.45 +0.1
1,283,974 - SMa2303 0.45 +0.3
1,283,974 - SMa2303 0.45 +0.5
1,283,974 - SMa2303 0.45 -0.1
1,284,080 + SMa2303 0.54 -0.3
1,284,080 + SMa2303 0.54 +0.2
1,284,081 - SMa2303 0.54 -1.4
1,284,097 - -0.2
1,284,148 + SMa2303 0.59 -1.1
1,284,149 - SMa2303 0.59 -1.8
1,284,149 - SMa2303 0.59 -0.9
1,284,293 + SMa2303 0.71 -0.6
1,284,294 - SMa2303 0.71 +2.0
1,284,306 - SMa2303 0.72 +0.0
1,284,306 - SMa2303 0.72 -0.4
1,284,541 + -1.0
1,284,644 - -1.1
1,284,649 + +0.2
1,284,649 + +1.3
1,284,708 + -1.1
1,284,821 + -0.9
1,284,821 + -0.1
1,284,866 - +1.9
1,285,048 + SMa2305 0.17 +0.7
1,285,199 + SMa2305 0.29 +0.9
1,285,199 + SMa2305 0.29 -0.5
1,285,254 - SMa2305 0.34 -3.2
1,285,292 + SMa2305 0.37 -1.1
1,285,456 + SMa2305 0.50 -0.3
1,285,456 + SMa2305 0.50 -1.2
1,285,456 + SMa2305 0.50 -0.1
1,285,505 + SMa2305 0.53 +0.2
1,285,582 + SMa2305 0.59 -0.3
1,285,582 + SMa2305 0.59 -0.0
1,285,582 + SMa2305 0.59 +0.4

Or see this region's nucleotide sequence