Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2301 and SMa2303 are separated by 83 nucleotides SMa2303 and SMa2305 are separated by 177 nucleotides
SMa2301: SMa2301 - Diguanylate cyclase, at 1,281,993 to 1,283,339
SMa2301
SMa2303: SMa2303 - ROK family transcriptional regulator, at 1,283,423 to 1,284,649
SMa2303
SMa2305: SMa2305 - ABC transporter substrate-binding protein, at 1,284,827 to 1,286,095
SMa2305
Position (kb)
1283
1284
1285 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1282.616 kb on + strand, within SMa2301 at 1282.616 kb on + strand, within SMa2301 at 1282.720 kb on + strand, within SMa2301 at 1282.720 kb on + strand, within SMa2301 at 1282.721 kb on - strand, within SMa2301 at 1282.828 kb on + strand, within SMa2301 at 1282.829 kb on - strand, within SMa2301 at 1282.893 kb on - strand, within SMa2301 at 1283.043 kb on + strand, within SMa2301 at 1283.044 kb on - strand, within SMa2301 at 1283.064 kb on + strand, within SMa2301 at 1283.064 kb on + strand, within SMa2301 at 1283.065 kb on - strand, within SMa2301 at 1283.212 kb on + strand at 1283.413 kb on + strand at 1283.414 kb on - strand at 1283.457 kb on - strand at 1283.619 kb on - strand, within SMa2303 at 1283.806 kb on - strand, within SMa2303 at 1283.812 kb on + strand, within SMa2303 at 1283.812 kb on + strand, within SMa2303 at 1283.812 kb on + strand, within SMa2303 at 1283.812 kb on + strand, within SMa2303 at 1283.812 kb on + strand, within SMa2303 at 1283.812 kb on + strand, within SMa2303 at 1283.812 kb on + strand, within SMa2303 at 1283.813 kb on - strand, within SMa2303 at 1283.813 kb on - strand, within SMa2303 at 1283.813 kb on - strand, within SMa2303 at 1283.813 kb on - strand, within SMa2303 at 1283.813 kb on - strand, within SMa2303 at 1283.857 kb on + strand, within SMa2303 at 1283.857 kb on + strand, within SMa2303 at 1283.857 kb on + strand, within SMa2303 at 1283.858 kb on - strand, within SMa2303 at 1283.911 kb on + strand, within SMa2303 at 1283.912 kb on - strand, within SMa2303 at 1283.936 kb on + strand, within SMa2303 at 1283.937 kb on - strand, within SMa2303 at 1283.973 kb on + strand, within SMa2303 at 1283.974 kb on - strand at 1283.974 kb on - strand, within SMa2303 at 1283.974 kb on - strand, within SMa2303 at 1283.974 kb on - strand, within SMa2303 at 1283.974 kb on - strand, within SMa2303 at 1284.080 kb on + strand, within SMa2303 at 1284.080 kb on + strand, within SMa2303 at 1284.081 kb on - strand, within SMa2303 at 1284.097 kb on - strand at 1284.148 kb on + strand, within SMa2303 at 1284.149 kb on - strand, within SMa2303 at 1284.149 kb on - strand, within SMa2303 at 1284.293 kb on + strand, within SMa2303 at 1284.294 kb on - strand, within SMa2303 at 1284.306 kb on - strand, within SMa2303 at 1284.306 kb on - strand, within SMa2303 at 1284.541 kb on + strand at 1284.644 kb on - strand at 1284.649 kb on + strand at 1284.649 kb on + strand at 1284.708 kb on + strand at 1284.821 kb on + strand at 1284.821 kb on + strand at 1284.866 kb on - strand at 1285.048 kb on + strand, within SMa2305 at 1285.199 kb on + strand, within SMa2305 at 1285.199 kb on + strand, within SMa2305 at 1285.254 kb on - strand, within SMa2305 at 1285.292 kb on + strand, within SMa2305 at 1285.456 kb on + strand, within SMa2305 at 1285.456 kb on + strand, within SMa2305 at 1285.456 kb on + strand, within SMa2305 at 1285.505 kb on + strand, within SMa2305 at 1285.582 kb on + strand, within SMa2305 at 1285.582 kb on + strand, within SMa2305 at 1285.582 kb on + strand, within SMa2305
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 1,282,616 + SMa2301 0.46 -1.0 1,282,616 + SMa2301 0.46 +0.6 1,282,720 + SMa2301 0.54 -0.6 1,282,720 + SMa2301 0.54 +0.4 1,282,721 - SMa2301 0.54 -1.9 1,282,828 + SMa2301 0.62 +0.3 1,282,829 - SMa2301 0.62 -0.3 1,282,893 - SMa2301 0.67 -0.4 1,283,043 + SMa2301 0.78 +2.6 1,283,044 - SMa2301 0.78 +2.2 1,283,064 + SMa2301 0.80 -0.3 1,283,064 + SMa2301 0.80 +0.0 1,283,065 - SMa2301 0.80 +0.4 1,283,212 + +0.8 1,283,413 + -0.5 1,283,414 - +0.2 1,283,457 - -0.8 1,283,619 - SMa2303 0.16 +0.2 1,283,806 - SMa2303 0.31 +0.8 1,283,812 + SMa2303 0.32 -1.4 1,283,812 + SMa2303 0.32 -1.0 1,283,812 + SMa2303 0.32 -0.2 1,283,812 + SMa2303 0.32 -1.0 1,283,812 + SMa2303 0.32 -0.0 1,283,812 + SMa2303 0.32 -0.4 1,283,812 + SMa2303 0.32 -0.1 1,283,813 - SMa2303 0.32 +1.3 1,283,813 - SMa2303 0.32 -1.0 1,283,813 - SMa2303 0.32 -1.5 1,283,813 - SMa2303 0.32 -0.3 1,283,813 - SMa2303 0.32 +0.7 1,283,857 + SMa2303 0.35 -0.9 1,283,857 + SMa2303 0.35 -0.4 1,283,857 + SMa2303 0.35 -0.1 1,283,858 - SMa2303 0.35 +4.4 1,283,911 + SMa2303 0.40 -2.8 1,283,912 - SMa2303 0.40 +1.2 1,283,936 + SMa2303 0.42 +0.0 1,283,937 - SMa2303 0.42 -0.6 1,283,973 + SMa2303 0.45 +0.5 1,283,974 - -0.5 1,283,974 - SMa2303 0.45 +0.1 1,283,974 - SMa2303 0.45 +0.3 1,283,974 - SMa2303 0.45 +0.5 1,283,974 - SMa2303 0.45 -0.1 1,284,080 + SMa2303 0.54 -0.3 1,284,080 + SMa2303 0.54 +0.2 1,284,081 - SMa2303 0.54 -1.4 1,284,097 - -0.2 1,284,148 + SMa2303 0.59 -1.1 1,284,149 - SMa2303 0.59 -1.8 1,284,149 - SMa2303 0.59 -0.9 1,284,293 + SMa2303 0.71 -0.6 1,284,294 - SMa2303 0.71 +2.0 1,284,306 - SMa2303 0.72 +0.0 1,284,306 - SMa2303 0.72 -0.4 1,284,541 + -1.0 1,284,644 - -1.1 1,284,649 + +0.2 1,284,649 + +1.3 1,284,708 + -1.1 1,284,821 + -0.9 1,284,821 + -0.1 1,284,866 - +1.9 1,285,048 + SMa2305 0.17 +0.7 1,285,199 + SMa2305 0.29 +0.9 1,285,199 + SMa2305 0.29 -0.5 1,285,254 - SMa2305 0.34 -3.2 1,285,292 + SMa2305 0.37 -1.1 1,285,456 + SMa2305 0.50 -0.3 1,285,456 + SMa2305 0.50 -1.2 1,285,456 + SMa2305 0.50 -0.1 1,285,505 + SMa2305 0.53 +0.2 1,285,582 + SMa2305 0.59 -0.3 1,285,582 + SMa2305 0.59 -0.0 1,285,582 + SMa2305 0.59 +0.4
Or see this region's nucleotide sequence