Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1725 and SMa1726 are separated by 143 nucleotides SMa1726 and SMa1727 are separated by 100 nucleotides SMa1727 and SMa1729 are separated by 188 nucleotides
SMa1725: SMa1725 - Transcriptional regulator, at 972,775 to 973,770
SMa1725
SMa1726: SMa1726 - TetR family transcriptional regulator, at 973,914 to 974,525
SMa1726
SMa1727: SMa1727 - alpha/beta hydrolase, at 974,626 to 975,516
SMa1727
SMa1729: SMa1729 - ABC transporter substrate-binding protein, at 975,705 to 976,706
SMa1729
Position (kb) 974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 973.663 kb on + strand, within SMa1725 at 973.664 kb on - strand, within SMa1725 at 973.876 kb on + strand at 973.910 kb on - strand at 973.943 kb on + strand at 973.944 kb on - strand at 973.949 kb on + strand at 973.992 kb on - strand, within SMa1726 at 973.992 kb on - strand, within SMa1726 at 974.010 kb on - strand, within SMa1726 at 974.150 kb on + strand, within SMa1726 at 974.150 kb on + strand, within SMa1726 at 974.151 kb on - strand, within SMa1726 at 974.151 kb on - strand, within SMa1726 at 974.197 kb on - strand, within SMa1726 at 974.298 kb on + strand, within SMa1726 at 974.393 kb on + strand, within SMa1726 at 974.517 kb on - strand at 974.642 kb on + strand at 974.643 kb on - strand at 974.643 kb on - strand at 974.748 kb on - strand, within SMa1727 at 974.776 kb on + strand, within SMa1727 at 974.776 kb on + strand, within SMa1727 at 974.827 kb on + strand, within SMa1727 at 974.828 kb on - strand, within SMa1727 at 974.835 kb on + strand, within SMa1727 at 974.867 kb on - strand, within SMa1727 at 974.938 kb on + strand, within SMa1727 at 974.938 kb on + strand, within SMa1727 at 974.939 kb on - strand, within SMa1727 at 974.944 kb on + strand, within SMa1727 at 974.944 kb on + strand, within SMa1727 at 974.945 kb on - strand, within SMa1727 at 975.141 kb on + strand, within SMa1727 at 975.141 kb on + strand, within SMa1727 at 975.141 kb on + strand, within SMa1727 at 975.196 kb on + strand, within SMa1727 at 975.197 kb on - strand, within SMa1727 at 975.320 kb on + strand, within SMa1727 at 975.401 kb on + strand, within SMa1727 at 975.402 kb on - strand, within SMa1727 at 975.456 kb on + strand at 975.456 kb on + strand at 975.492 kb on - strand at 975.492 kb on - strand at 975.531 kb on + strand at 975.665 kb on + strand at 975.700 kb on - strand at 975.700 kb on - strand at 975.720 kb on + strand at 975.720 kb on + strand at 975.720 kb on + strand at 975.720 kb on + strand at 975.721 kb on - strand at 975.785 kb on - strand at 975.831 kb on + strand, within SMa1729 at 975.831 kb on + strand, within SMa1729 at 975.877 kb on + strand, within SMa1729 at 975.935 kb on + strand, within SMa1729 at 976.045 kb on + strand, within SMa1729 at 976.075 kb on + strand, within SMa1729 at 976.075 kb on + strand, within SMa1729 at 976.079 kb on - strand, within SMa1729 at 976.340 kb on - strand, within SMa1729 at 976.340 kb on - strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.351 kb on + strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.352 kb on - strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.464 kb on + strand, within SMa1729 at 976.465 kb on - strand, within SMa1729
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 973,663 + SMa1725 0.89 -0.6 973,664 - SMa1725 0.89 -0.2 973,876 + -0.8 973,910 - -2.3 973,943 + -1.2 973,944 - +0.5 973,949 + -0.4 973,992 - SMa1726 0.13 -0.9 973,992 - SMa1726 0.13 -0.0 974,010 - SMa1726 0.16 -3.1 974,150 + SMa1726 0.39 -0.3 974,150 + SMa1726 0.39 +0.2 974,151 - SMa1726 0.39 -0.3 974,151 - SMa1726 0.39 -0.9 974,197 - SMa1726 0.46 +0.3 974,298 + SMa1726 0.63 +0.1 974,393 + SMa1726 0.78 -1.5 974,517 - -1.8 974,642 + +0.8 974,643 - +0.5 974,643 - -1.1 974,748 - SMa1727 0.14 -0.6 974,776 + SMa1727 0.17 -3.3 974,776 + SMa1727 0.17 -0.1 974,827 + SMa1727 0.23 -1.0 974,828 - SMa1727 0.23 -1.8 974,835 + SMa1727 0.23 -0.6 974,867 - SMa1727 0.27 -2.2 974,938 + SMa1727 0.35 -1.6 974,938 + SMa1727 0.35 +0.1 974,939 - SMa1727 0.35 +0.5 974,944 + SMa1727 0.36 -0.3 974,944 + SMa1727 0.36 -0.4 974,945 - SMa1727 0.36 +0.7 975,141 + SMa1727 0.58 -0.3 975,141 + SMa1727 0.58 +0.9 975,141 + SMa1727 0.58 +1.0 975,196 + SMa1727 0.64 +0.2 975,197 - SMa1727 0.64 -0.7 975,320 + SMa1727 0.78 -1.6 975,401 + SMa1727 0.87 +0.2 975,402 - SMa1727 0.87 +1.0 975,456 + -0.1 975,456 + -0.9 975,492 - +0.9 975,492 - +0.5 975,531 + -0.5 975,665 + +0.8 975,700 - -0.6 975,700 - +0.1 975,720 + +0.7 975,720 + +0.1 975,720 + -0.0 975,720 + -0.2 975,721 - -0.2 975,785 - -1.6 975,831 + SMa1729 0.13 +0.4 975,831 + SMa1729 0.13 -0.3 975,877 + SMa1729 0.17 -0.6 975,935 + SMa1729 0.23 +0.9 976,045 + SMa1729 0.34 +1.0 976,075 + SMa1729 0.37 +0.8 976,075 + SMa1729 0.37 -0.9 976,079 - SMa1729 0.37 -0.4 976,340 - SMa1729 0.63 +0.1 976,340 - SMa1729 0.63 +2.0 976,351 + SMa1729 0.64 -0.9 976,351 + SMa1729 0.64 -0.3 976,351 + SMa1729 0.64 -0.0 976,352 - SMa1729 0.65 +1.1 976,352 - SMa1729 0.65 -0.2 976,352 - SMa1729 0.65 +1.3 976,352 - SMa1729 0.65 -1.1 976,464 + SMa1729 0.76 +1.0 976,464 + SMa1729 0.76 -0.4 976,464 + SMa1729 0.76 -1.9 976,465 - SMa1729 0.76 -0.1
Or see this region's nucleotide sequence