Strain Fitness in Sinorhizobium meliloti 1021 around SMa1583

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1582 and SMa1583 are separated by 248 nucleotidesSMa1583 and SMa1585 are separated by 120 nucleotides SMa1582: SMa1582 - hypothetical protein, at 875,222 to 876,520 SMa1582 SMa1583: SMa1583 - CyaF5 adenylate cyclase, at 876,769 to 878,538 SMa1583 SMa1585: SMa1585 - hypothetical protein, at 878,659 to 878,961 SMa1585 Position (kb) 876 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 875.852 kb on + strand, within SMa1582at 875.852 kb on + strand, within SMa1582at 875.852 kb on + strand, within SMa1582at 875.852 kb on + strand, within SMa1582at 875.853 kb on - strand, within SMa1582at 875.873 kb on + strand, within SMa1582at 875.983 kb on + strand, within SMa1582at 876.080 kb on - strand, within SMa1582at 876.080 kb on - strand, within SMa1582at 876.080 kb on - strand, within SMa1582at 876.105 kb on - strand, within SMa1582at 876.125 kb on + strand, within SMa1582at 876.125 kb on + strand, within SMa1582at 876.125 kb on + strand, within SMa1582at 876.126 kb on - strand, within SMa1582at 876.126 kb on - strand, within SMa1582at 876.186 kb on - strand, within SMa1582at 876.248 kb on - strand, within SMa1582at 876.248 kb on - strand, within SMa1582at 876.248 kb on - strand, within SMa1582at 876.447 kb on + strandat 876.447 kb on + strandat 876.447 kb on + strandat 876.447 kb on + strandat 876.448 kb on - strandat 876.539 kb on - strandat 876.546 kb on + strandat 876.558 kb on + strandat 876.594 kb on - strandat 876.691 kb on - strandat 876.722 kb on - strandat 876.774 kb on + strandat 876.774 kb on + strandat 876.839 kb on - strandat 876.886 kb on + strandat 876.935 kb on + strandat 876.963 kb on + strand, within SMa1583at 877.098 kb on + strand, within SMa1583at 877.098 kb on + strand, within SMa1583at 877.101 kb on - strand, within SMa1583at 877.259 kb on + strand, within SMa1583at 877.511 kb on + strand, within SMa1583at 877.511 kb on + strand, within SMa1583at 877.512 kb on - strand, within SMa1583at 877.512 kb on - strand, within SMa1583at 877.646 kb on + strand, within SMa1583at 877.745 kb on + strand, within SMa1583at 877.745 kb on + strand, within SMa1583at 877.746 kb on - strand, within SMa1583at 877.746 kb on - strand, within SMa1583at 877.750 kb on + strand, within SMa1583at 877.751 kb on - strand, within SMa1583at 877.751 kb on - strand, within SMa1583at 877.826 kb on - strand, within SMa1583at 877.873 kb on - strand, within SMa1583at 877.873 kb on - strand, within SMa1583at 877.875 kb on + strand, within SMa1583at 877.890 kb on - strand, within SMa1583at 877.936 kb on + strand, within SMa1583at 878.007 kb on + strand, within SMa1583at 878.102 kb on + strand, within SMa1583at 878.102 kb on + strand, within SMa1583at 878.102 kb on + strand, within SMa1583at 878.103 kb on - strand, within SMa1583at 878.103 kb on - strand, within SMa1583at 878.167 kb on + strand, within SMa1583at 878.338 kb on + strand, within SMa1583at 878.338 kb on + strand, within SMa1583at 878.386 kb on - strandat 878.532 kb on + strandat 878.532 kb on + strandat 878.725 kb on + strand, within SMa1585at 878.725 kb on + strand, within SMa1585at 878.750 kb on + strand, within SMa1585at 878.750 kb on + strand, within SMa1585at 878.806 kb on - strand, within SMa1585at 878.896 kb on + strand, within SMa1585at 878.897 kb on - strand, within SMa1585at 878.944 kb on + strandat 878.956 kb on - strandat 879.011 kb on - strandat 879.082 kb on - strandat 879.149 kb on - strandat 879.149 kb on - strandat 879.186 kb on + strandat 879.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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875,852 + SMa1582 0.48 -0.0
875,852 + SMa1582 0.48 +0.6
875,852 + SMa1582 0.48 +1.4
875,852 + SMa1582 0.48 +0.7
875,853 - SMa1582 0.49 -1.3
875,873 + SMa1582 0.50 -0.1
875,983 + SMa1582 0.59 -0.3
876,080 - SMa1582 0.66 -1.0
876,080 - SMa1582 0.66 +0.8
876,080 - SMa1582 0.66 +1.7
876,105 - SMa1582 0.68 +0.1
876,125 + SMa1582 0.70 -0.6
876,125 + SMa1582 0.70 +0.8
876,125 + SMa1582 0.70 +1.1
876,126 - SMa1582 0.70 +0.3
876,126 - SMa1582 0.70 +0.2
876,186 - SMa1582 0.74 -0.3
876,248 - SMa1582 0.79 -1.3
876,248 - SMa1582 0.79 -0.5
876,248 - SMa1582 0.79 -1.1
876,447 + -1.8
876,447 + +1.2
876,447 + +0.1
876,447 + +0.7
876,448 - +0.7
876,539 - +0.5
876,546 + +0.7
876,558 + -0.2
876,594 - +0.3
876,691 - -0.2
876,722 - +0.0
876,774 + +0.7
876,774 + +0.8
876,839 - +0.7
876,886 + -0.6
876,935 + +1.0
876,963 + SMa1583 0.11 +1.3
877,098 + SMa1583 0.19 +1.1
877,098 + SMa1583 0.19 +0.7
877,101 - SMa1583 0.19 +0.6
877,259 + SMa1583 0.28 -0.5
877,511 + SMa1583 0.42 +1.5
877,511 + SMa1583 0.42 -0.2
877,512 - SMa1583 0.42 -0.3
877,512 - SMa1583 0.42 +0.2
877,646 + SMa1583 0.50 -0.1
877,745 + SMa1583 0.55 +2.0
877,745 + SMa1583 0.55 -0.0
877,746 - SMa1583 0.55 -0.0
877,746 - SMa1583 0.55 +0.0
877,750 + SMa1583 0.55 -3.0
877,751 - SMa1583 0.55 -2.2
877,751 - SMa1583 0.55 +0.8
877,826 - SMa1583 0.60 +2.1
877,873 - SMa1583 0.62 +1.5
877,873 - SMa1583 0.62 -0.8
877,875 + SMa1583 0.62 -0.0
877,890 - SMa1583 0.63 +1.3
877,936 + SMa1583 0.66 +0.8
878,007 + SMa1583 0.70 -1.7
878,102 + SMa1583 0.75 +0.3
878,102 + SMa1583 0.75 -0.2
878,102 + SMa1583 0.75 +0.2
878,103 - SMa1583 0.75 +1.1
878,103 - SMa1583 0.75 +0.1
878,167 + SMa1583 0.79 -1.5
878,338 + SMa1583 0.89 +0.2
878,338 + SMa1583 0.89 -0.5
878,386 - +0.5
878,532 + +0.1
878,532 + -0.1
878,725 + SMa1585 0.22 +0.2
878,725 + SMa1585 0.22 -0.1
878,750 + SMa1585 0.30 -1.7
878,750 + SMa1585 0.30 +0.1
878,806 - SMa1585 0.49 +0.5
878,896 + SMa1585 0.78 +0.4
878,897 - SMa1585 0.79 -0.9
878,944 + +0.6
878,956 - -2.1
879,011 - +0.7
879,082 - -0.3
879,149 - +1.2
879,149 - +0.6
879,186 + +0.4
879,293 - -0.6

Or see this region's nucleotide sequence