Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1576 and SMa1578 are separated by 42 nucleotides SMa1578 and SMa1579 are separated by 259 nucleotides SMa1579 and SMa1580 are separated by 112 nucleotides SMa1580 and SMa1582 are separated by 98 nucleotides
SMa1576: SMa1576 - CpaB2 pilus assembly protein, at 871,597 to 872,388
SMa1576
SMa1578: SMa1578 - CpaA2 pilus assembly protein, at 872,431 to 872,943
SMa1578
SMa1579: SMa1579 - hypothetical protein, at 873,203 to 874,498
SMa1579
SMa1580: SMa1580 - hypothetical protein, at 874,611 to 875,123
SMa1580
SMa1582: SMa1582 - hypothetical protein, at 875,222 to 876,520
SMa1582
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 872.379 kb on + strand at 872.433 kb on - strand at 872.502 kb on - strand, within SMa1578 at 872.508 kb on + strand, within SMa1578 at 872.572 kb on + strand, within SMa1578 at 872.572 kb on + strand at 872.628 kb on - strand, within SMa1578 at 872.851 kb on + strand, within SMa1578 at 872.886 kb on - strand, within SMa1578 at 873.040 kb on - strand at 873.114 kb on + strand at 873.114 kb on + strand at 873.115 kb on - strand at 873.365 kb on + strand, within SMa1579 at 873.408 kb on + strand, within SMa1579 at 873.483 kb on + strand, within SMa1579 at 873.484 kb on - strand, within SMa1579 at 873.484 kb on - strand, within SMa1579 at 873.738 kb on + strand, within SMa1579 at 873.739 kb on - strand, within SMa1579 at 873.739 kb on - strand, within SMa1579 at 873.769 kb on + strand, within SMa1579 at 873.769 kb on + strand, within SMa1579 at 873.984 kb on - strand, within SMa1579 at 874.001 kb on + strand, within SMa1579 at 874.081 kb on - strand, within SMa1579 at 874.094 kb on + strand, within SMa1579 at 874.094 kb on + strand, within SMa1579 at 874.095 kb on - strand, within SMa1579 at 874.095 kb on - strand, within SMa1579 at 874.095 kb on - strand, within SMa1579 at 874.096 kb on + strand, within SMa1579 at 874.096 kb on + strand, within SMa1579 at 874.097 kb on - strand, within SMa1579 at 874.097 kb on - strand, within SMa1579 at 874.101 kb on + strand, within SMa1579 at 874.101 kb on + strand, within SMa1579 at 874.102 kb on - strand, within SMa1579 at 874.157 kb on - strand, within SMa1579 at 874.286 kb on + strand, within SMa1579 at 874.293 kb on + strand, within SMa1579 at 874.293 kb on + strand, within SMa1579 at 874.293 kb on + strand, within SMa1579 at 874.332 kb on - strand, within SMa1579 at 874.387 kb on + strand at 874.544 kb on + strand at 874.544 kb on + strand at 874.700 kb on + strand, within SMa1580 at 874.881 kb on - strand, within SMa1580 at 875.130 kb on + strand at 875.130 kb on + strand at 875.130 kb on + strand at 875.130 kb on + strand at 875.130 kb on + strand at 875.130 kb on + strand at 875.131 kb on - strand at 875.131 kb on - strand at 875.131 kb on - strand at 875.322 kb on - strand at 875.322 kb on - strand at 875.445 kb on + strand, within SMa1582
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 872,379 + -1.0 872,433 - -0.6 872,502 - SMa1578 0.14 -0.9 872,508 + SMa1578 0.15 -0.2 872,572 + SMa1578 0.27 +0.6 872,572 + -1.1 872,628 - SMa1578 0.38 +1.7 872,851 + SMa1578 0.82 +0.4 872,886 - SMa1578 0.89 -0.4 873,040 - -0.2 873,114 + -1.0 873,114 + +1.7 873,115 - +1.2 873,365 + SMa1579 0.12 -0.2 873,408 + SMa1579 0.16 +0.6 873,483 + SMa1579 0.22 -0.9 873,484 - SMa1579 0.22 +0.4 873,484 - SMa1579 0.22 -0.2 873,738 + SMa1579 0.41 -2.5 873,739 - SMa1579 0.41 +0.4 873,739 - SMa1579 0.41 -0.7 873,769 + SMa1579 0.44 +0.4 873,769 + SMa1579 0.44 -1.1 873,984 - SMa1579 0.60 +0.4 874,001 + SMa1579 0.62 +0.4 874,081 - SMa1579 0.68 -0.7 874,094 + SMa1579 0.69 +0.0 874,094 + SMa1579 0.69 +0.3 874,095 - SMa1579 0.69 -1.2 874,095 - SMa1579 0.69 -2.1 874,095 - SMa1579 0.69 -0.7 874,096 + SMa1579 0.69 +0.1 874,096 + SMa1579 0.69 -1.0 874,097 - SMa1579 0.69 -2.4 874,097 - SMa1579 0.69 -3.2 874,101 + SMa1579 0.69 -0.6 874,101 + SMa1579 0.69 -0.3 874,102 - SMa1579 0.69 +0.0 874,157 - SMa1579 0.74 -0.0 874,286 + SMa1579 0.84 +0.7 874,293 + SMa1579 0.84 +0.4 874,293 + SMa1579 0.84 +0.2 874,293 + SMa1579 0.84 -0.2 874,332 - SMa1579 0.87 +0.0 874,387 + -0.5 874,544 + +0.5 874,544 + +0.7 874,700 + SMa1580 0.17 -3.0 874,881 - SMa1580 0.53 +0.7 875,130 + +0.2 875,130 + -0.7 875,130 + -0.6 875,130 + -1.0 875,130 + +0.4 875,130 + -1.0 875,131 - +1.9 875,131 - +0.5 875,131 - -0.4 875,322 - -1.7 875,322 - +0.6 875,445 + SMa1582 0.17 -0.0
Or see this region's nucleotide sequence