Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1344 and SMa1345 overlap by 1 nucleotides SMa1345 and SMa1347 are separated by 108 nucleotides
SMa1344: SMa1344 - ABC transporter ATP-binding protein, at 734,850 to 735,959
SMa1344
SMa1345: SMa1345 - ABC transporter ATP-binding protein, at 735,959 to 737,035
SMa1345
SMa1347: SMa1347 - dehydrogenase, at 737,144 to 738,118
SMa1347
Position (kb) 735
736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 734.987 kb on - strand, within SMa1344 at 735.035 kb on - strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.088 kb on + strand, within SMa1344 at 735.088 kb on + strand, within SMa1344 at 735.134 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.712 kb on + strand, within SMa1344 at 735.713 kb on - strand, within SMa1344 at 735.777 kb on - strand, within SMa1344 at 735.809 kb on - strand, within SMa1344 at 735.895 kb on + strand at 735.896 kb on - strand at 735.896 kb on - strand at 735.896 kb on - strand at 736.208 kb on + strand, within SMa1345 at 736.227 kb on - strand, within SMa1345 at 736.228 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.848 kb on + strand, within SMa1345 at 736.849 kb on - strand, within SMa1345 at 736.894 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.901 kb on - strand, within SMa1345 at 737.145 kb on + strand at 737.322 kb on + strand, within SMa1347 at 737.322 kb on + strand, within SMa1347 at 737.322 kb on + strand, within SMa1347 at 737.323 kb on - strand, within SMa1347 at 737.323 kb on - strand, within SMa1347 at 737.350 kb on + strand, within SMa1347 at 737.351 kb on - strand at 737.351 kb on - strand, within SMa1347 at 737.637 kb on + strand, within SMa1347 at 737.740 kb on + strand, within SMa1347 at 737.740 kb on + strand, within SMa1347 at 737.773 kb on + strand, within SMa1347 at 737.925 kb on - strand, within SMa1347 at 737.943 kb on - strand, within SMa1347
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 734,987 - SMa1344 0.12 -2.0 735,035 - SMa1344 0.17 -0.3 735,058 + SMa1344 0.19 +0.9 735,058 + SMa1344 0.19 +0.4 735,058 + SMa1344 0.19 +0.8 735,088 + SMa1344 0.21 +0.8 735,088 + SMa1344 0.21 -0.5 735,134 + SMa1344 0.26 -0.1 735,414 + SMa1344 0.51 +0.4 735,414 + SMa1344 0.51 -0.1 735,414 + SMa1344 0.51 +1.3 735,414 + SMa1344 0.51 +1.5 735,415 - SMa1344 0.51 -0.4 735,415 - SMa1344 0.51 +0.1 735,415 - SMa1344 0.51 -0.9 735,419 - SMa1344 0.51 +1.3 735,419 - SMa1344 0.51 +0.7 735,419 - SMa1344 0.51 +0.9 735,712 + SMa1344 0.78 +0.4 735,713 - SMa1344 0.78 +0.4 735,777 - SMa1344 0.84 +1.3 735,809 - SMa1344 0.86 -0.8 735,895 + +1.7 735,896 - -2.8 735,896 - +2.4 735,896 - -1.3 736,208 + SMa1345 0.23 -0.7 736,227 - SMa1345 0.25 -1.0 736,228 + SMa1345 0.25 -0.4 736,628 + SMa1345 0.62 -2.3 736,628 + SMa1345 0.62 -1.0 736,628 + SMa1345 0.62 -0.4 736,628 + SMa1345 0.62 -0.5 736,628 + SMa1345 0.62 -2.7 736,629 - SMa1345 0.62 -0.9 736,629 - SMa1345 0.62 -1.7 736,629 - SMa1345 0.62 +0.2 736,848 + SMa1345 0.83 -1.7 736,849 - SMa1345 0.83 -2.0 736,894 + SMa1345 0.87 +0.4 736,900 + SMa1345 0.87 +0.8 736,900 + SMa1345 0.87 +0.3 736,901 - SMa1345 0.87 -0.3 737,145 + -0.1 737,322 + SMa1347 0.18 -0.5 737,322 + SMa1347 0.18 -0.2 737,322 + SMa1347 0.18 +1.0 737,323 - SMa1347 0.18 -1.7 737,323 - SMa1347 0.18 +1.3 737,350 + SMa1347 0.21 +0.8 737,351 - +1.7 737,351 - SMa1347 0.21 +0.4 737,637 + SMa1347 0.51 -1.3 737,740 + SMa1347 0.61 +1.8 737,740 + SMa1347 0.61 -3.0 737,773 + SMa1347 0.65 -0.1 737,925 - SMa1347 0.80 +3.3 737,943 - SMa1347 0.82 +0.3
Or see this region's nucleotide sequence