Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1076 and SMa1077 are separated by 161 nucleotides SMa1077 and SMa1078 are separated by 29 nucleotides SMa1078 and SMa1079 are separated by 5 nucleotides SMa1079 and SMa1081 are separated by 21 nucleotides
SMa1076: SMa1076 - hypothetical protein, at 587,855 to 588,439
SMa1076
SMa1077: SMa1077 - Nex18 symbiotically induced protein, at 588,601 to 589,083
SMa1077
SMa1078: SMa1078 - hypothetical protein, at 589,113 to 589,337
SMa1078
SMa1079: SMa1079 - TspO/MBR family protein, at 589,343 to 589,885
SMa1079
SMa1081: SMa1081 - hypothetical protein, at 589,907 to 590,068
SMa1081
Position (kb) 589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 588.230 kb on + strand, within SMa1076 at 588.231 kb on - strand, within SMa1076 at 588.331 kb on + strand, within SMa1076 at 588.332 kb on - strand, within SMa1076 at 588.382 kb on + strand at 588.382 kb on + strand at 588.385 kb on + strand at 588.385 kb on + strand at 588.385 kb on + strand at 588.385 kb on + strand at 588.386 kb on - strand at 588.386 kb on - strand at 588.419 kb on - strand at 588.641 kb on + strand at 588.641 kb on + strand at 588.881 kb on - strand, within SMa1077 at 588.881 kb on - strand, within SMa1077 at 589.188 kb on - strand, within SMa1078 at 589.245 kb on + strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.256 kb on - strand, within SMa1078 at 589.342 kb on + strand at 589.468 kb on + strand, within SMa1079 at 589.527 kb on + strand, within SMa1079 at 589.528 kb on - strand, within SMa1079 at 589.553 kb on + strand, within SMa1079 at 589.553 kb on + strand, within SMa1079 at 589.554 kb on - strand, within SMa1079 at 589.631 kb on + strand, within SMa1079 at 589.631 kb on + strand, within SMa1079 at 589.632 kb on - strand, within SMa1079 at 589.714 kb on + strand, within SMa1079 at 589.715 kb on - strand, within SMa1079 at 589.797 kb on - strand, within SMa1079 at 589.986 kb on + strand, within SMa1081 at 590.031 kb on - strand, within SMa1081 at 590.031 kb on - strand, within SMa1081 at 590.113 kb on + strand at 590.114 kb on - strand at 590.114 kb on - strand at 590.172 kb on + strand at 590.172 kb on + strand at 590.173 kb on - strand at 590.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 588,230 + SMa1076 0.64 -0.4 588,231 - SMa1076 0.64 -1.1 588,331 + SMa1076 0.81 +0.1 588,332 - SMa1076 0.82 +0.5 588,382 + -1.2 588,382 + -2.5 588,385 + -0.8 588,385 + -1.1 588,385 + -0.1 588,385 + +0.7 588,386 - +0.4 588,386 - -0.5 588,419 - +0.1 588,641 + -1.0 588,641 + +0.1 588,881 - SMa1077 0.58 -1.2 588,881 - SMa1077 0.58 -0.5 589,188 - SMa1078 0.33 +0.5 589,245 + SMa1078 0.59 -1.9 589,246 - SMa1078 0.59 -0.1 589,246 - SMa1078 0.59 -1.2 589,246 - SMa1078 0.59 +0.1 589,256 - SMa1078 0.64 -0.7 589,342 + -0.4 589,468 + SMa1079 0.23 -0.5 589,527 + SMa1079 0.34 -0.9 589,528 - SMa1079 0.34 +0.6 589,553 + SMa1079 0.39 -0.0 589,553 + SMa1079 0.39 +0.3 589,554 - SMa1079 0.39 -1.6 589,631 + SMa1079 0.53 +0.4 589,631 + SMa1079 0.53 +0.9 589,632 - SMa1079 0.53 -3.4 589,714 + SMa1079 0.68 +1.2 589,715 - SMa1079 0.69 -0.6 589,797 - SMa1079 0.84 -0.6 589,986 + SMa1081 0.49 +0.0 590,031 - SMa1081 0.77 +0.3 590,031 - SMa1081 0.77 +0.4 590,113 + +0.0 590,114 - +0.1 590,114 - +0.9 590,172 + +0.8 590,172 + +0.4 590,173 - +0.1 590,173 - -1.4
Or see this region's nucleotide sequence