Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1029 and SMa1030 overlap by 4 nucleotides SMa1030 and SMa1032 are separated by 87 nucleotides SMa1032 and SMa1033 are separated by 197 nucleotides SMa1033 and SMa1036 are separated by 52 nucleotides SMa1036 and SMa1037 overlap by 4 nucleotides
SMa1029: SMa1029 - TRm1b transposase, at 568,081 to 568,911
SMa1029
SMa1030: SMa1030 - TRm1a transposase, at 568,908 to 569,279
SMa1030
SMa1032: SMa1032 - hypothetical protein, at 569,367 to 569,612
SMa1032
SMa1033: SMa1033 - hypothetical protein, at 569,810 to 570,190
SMa1033
SMa1036: SMa1036 - hypothetical protein, at 570,243 to 570,512
SMa1036
SMa1037: SMa1037 - hypothetical protein, at 570,509 to 571,975
SMa1037
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1 at 569.671 kb on - strand at 569.688 kb on + strand at 569.727 kb on - strand at 569.798 kb on + strand at 569.799 kb on - strand at 569.799 kb on - strand at 569.815 kb on + strand at 569.815 kb on + strand at 569.816 kb on - strand at 569.941 kb on + strand, within SMa1033 at 569.942 kb on - strand, within SMa1033 at 569.986 kb on + strand, within SMa1033 at 569.987 kb on - strand, within SMa1033 at 569.987 kb on - strand, within SMa1033 at 569.987 kb on - strand, within SMa1033 at 570.088 kb on + strand, within SMa1033 at 570.088 kb on + strand, within SMa1033 at 570.089 kb on - strand, within SMa1033 at 570.091 kb on + strand, within SMa1033 at 570.193 kb on - strand at 570.412 kb on - strand, within SMa1036 at 570.412 kb on - strand, within SMa1036 at 570.413 kb on + strand, within SMa1036 at 570.413 kb on + strand, within SMa1036 at 570.414 kb on - strand, within SMa1036 at 570.414 kb on - strand, within SMa1036 at 570.694 kb on - strand, within SMa1037 at 570.791 kb on + strand, within SMa1037 at 570.946 kb on + strand, within SMa1037
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 569,671 - -0.9 569,688 + -0.2 569,727 - -0.7 569,798 + +0.4 569,799 - -0.1 569,799 - +1.0 569,815 + -0.6 569,815 + +0.1 569,816 - +0.3 569,941 + SMa1033 0.34 +0.0 569,942 - SMa1033 0.35 -2.1 569,986 + SMa1033 0.46 +0.5 569,987 - SMa1033 0.46 -0.9 569,987 - SMa1033 0.46 +1.1 569,987 - SMa1033 0.46 -0.8 570,088 + SMa1033 0.73 -2.6 570,088 + SMa1033 0.73 +0.1 570,089 - SMa1033 0.73 -2.3 570,091 + SMa1033 0.74 -0.6 570,193 - -0.4 570,412 - SMa1036 0.63 -1.2 570,412 - SMa1036 0.63 +0.2 570,413 + SMa1036 0.63 +0.0 570,413 + SMa1036 0.63 +0.9 570,414 - SMa1036 0.63 -0.2 570,414 - SMa1036 0.63 +0.5 570,694 - SMa1037 0.13 -0.8 570,791 + SMa1037 0.19 -1.9 570,946 + SMa1037 0.30 +0.4
Or see this region's nucleotide sequence