Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0684 and SMa0687 are separated by 513 nucleotides SMa0687 and SMa0689 are separated by 188 nucleotides
SMa0684: SMa0684 - transport protein, at 369,951 to 371,276
SMa0684
SMa0687: SMa0687 - hypothetical protein, at 371,790 to 372,296
SMa0687
SMa0689: SMa0689 - hypothetical protein, at 372,485 to 373,435
SMa0689
Position (kb) 371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 370.806 kb on - strand, within SMa0684 at 370.811 kb on - strand, within SMa0684 at 371.035 kb on + strand, within SMa0684 at 371.036 kb on - strand, within SMa0684 at 371.048 kb on + strand, within SMa0684 at 371.049 kb on - strand, within SMa0684 at 371.050 kb on + strand, within SMa0684 at 371.050 kb on + strand, within SMa0684 at 371.051 kb on - strand, within SMa0684 at 371.051 kb on - strand, within SMa0684 at 371.057 kb on - strand, within SMa0684 at 371.057 kb on - strand, within SMa0684 at 371.057 kb on - strand, within SMa0684 at 371.214 kb on - strand at 371.232 kb on - strand at 371.308 kb on - strand at 371.308 kb on - strand at 371.312 kb on - strand at 371.312 kb on - strand at 371.312 kb on - strand at 371.314 kb on + strand at 371.314 kb on + strand at 371.315 kb on - strand at 371.315 kb on - strand at 371.379 kb on + strand at 371.380 kb on - strand at 371.380 kb on - strand at 371.397 kb on + strand at 371.397 kb on + strand at 371.398 kb on - strand at 371.398 kb on - strand at 371.510 kb on - strand at 371.510 kb on - strand at 371.713 kb on - strand at 371.713 kb on - strand at 371.783 kb on + strand at 371.787 kb on + strand at 371.788 kb on - strand at 371.788 kb on - strand at 371.791 kb on + strand at 371.791 kb on + strand at 371.791 kb on + strand at 371.792 kb on - strand at 371.792 kb on - strand at 371.796 kb on - strand at 371.796 kb on - strand at 371.912 kb on - strand, within SMa0687 at 371.942 kb on - strand, within SMa0687 at 371.942 kb on - strand, within SMa0687 at 372.012 kb on + strand, within SMa0687 at 372.013 kb on - strand, within SMa0687 at 372.013 kb on - strand, within SMa0687 at 372.016 kb on - strand, within SMa0687 at 372.016 kb on - strand, within SMa0687 at 372.062 kb on - strand, within SMa0687 at 372.073 kb on + strand, within SMa0687 at 372.074 kb on - strand, within SMa0687 at 372.100 kb on - strand, within SMa0687 at 372.202 kb on + strand, within SMa0687 at 372.302 kb on + strand at 372.302 kb on + strand at 372.302 kb on + strand at 372.303 kb on - strand at 372.357 kb on - strand at 372.368 kb on + strand at 372.373 kb on - strand at 372.418 kb on + strand at 372.418 kb on + strand at 372.418 kb on + strand at 372.419 kb on - strand at 372.530 kb on + strand at 372.531 kb on - strand at 372.531 kb on - strand at 372.531 kb on - strand at 372.576 kb on + strand at 372.577 kb on - strand at 372.684 kb on + strand, within SMa0689 at 372.690 kb on + strand, within SMa0689 at 372.751 kb on - strand, within SMa0689 at 372.751 kb on - strand, within SMa0689 at 372.794 kb on - strand, within SMa0689 at 372.794 kb on - strand, within SMa0689 at 372.841 kb on - strand, within SMa0689 at 372.920 kb on + strand, within SMa0689 at 372.921 kb on - strand, within SMa0689 at 372.921 kb on - strand, within SMa0689 at 372.924 kb on + strand, within SMa0689 at 372.924 kb on + strand, within SMa0689 at 372.925 kb on - strand, within SMa0689 at 372.925 kb on - strand, within SMa0689 at 372.925 kb on - strand, within SMa0689 at 372.925 kb on - strand, within SMa0689 at 372.945 kb on + strand, within SMa0689 at 372.945 kb on + strand, within SMa0689 at 372.945 kb on + strand, within SMa0689 at 372.946 kb on - strand, within SMa0689 at 372.946 kb on - strand, within SMa0689 at 373.020 kb on + strand, within SMa0689 at 373.021 kb on - strand, within SMa0689 at 373.021 kb on - strand, within SMa0689
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 370,806 - SMa0684 0.64 -0.7 370,811 - SMa0684 0.65 -0.9 371,035 + SMa0684 0.82 +0.1 371,036 - SMa0684 0.82 -1.2 371,048 + SMa0684 0.83 +1.7 371,049 - SMa0684 0.83 -0.9 371,050 + SMa0684 0.83 +0.1 371,050 + SMa0684 0.83 +0.1 371,051 - SMa0684 0.83 -0.7 371,051 - SMa0684 0.83 +0.8 371,057 - SMa0684 0.83 +0.7 371,057 - SMa0684 0.83 -1.4 371,057 - SMa0684 0.83 -0.2 371,214 - -2.1 371,232 - -0.3 371,308 - +0.4 371,308 - +0.2 371,312 - -0.0 371,312 - -0.6 371,312 - -0.2 371,314 + -2.1 371,314 + +0.1 371,315 - +1.7 371,315 - -1.8 371,379 + -0.3 371,380 - -0.2 371,380 - -0.8 371,397 + -0.0 371,397 + -0.9 371,398 - -2.9 371,398 - +0.3 371,510 - -0.3 371,510 - -0.3 371,713 - +0.7 371,713 - +0.4 371,783 + +0.1 371,787 + +0.8 371,788 - -0.8 371,788 - +0.6 371,791 + +2.0 371,791 + +0.1 371,791 + +2.7 371,792 - +0.4 371,792 - +2.5 371,796 - -0.6 371,796 - +0.1 371,912 - SMa0687 0.24 +0.3 371,942 - SMa0687 0.30 -2.7 371,942 - SMa0687 0.30 +0.3 372,012 + SMa0687 0.44 +0.5 372,013 - SMa0687 0.44 -0.4 372,013 - SMa0687 0.44 +1.1 372,016 - SMa0687 0.45 +0.0 372,016 - SMa0687 0.45 -0.2 372,062 - SMa0687 0.54 -0.1 372,073 + SMa0687 0.56 +0.9 372,074 - SMa0687 0.56 +0.7 372,100 - SMa0687 0.61 +2.3 372,202 + SMa0687 0.81 +0.1 372,302 + +0.2 372,302 + +0.4 372,302 + +0.0 372,303 - -1.3 372,357 - -0.4 372,368 + +0.1 372,373 - -1.0 372,418 + +1.1 372,418 + -1.9 372,418 + +0.2 372,419 - +0.8 372,530 + -0.1 372,531 - -0.3 372,531 - -0.2 372,531 - +0.6 372,576 + +0.3 372,577 - +0.2 372,684 + SMa0689 0.21 +0.4 372,690 + SMa0689 0.22 -0.3 372,751 - SMa0689 0.28 -0.1 372,751 - SMa0689 0.28 +0.9 372,794 - SMa0689 0.32 -1.0 372,794 - SMa0689 0.32 +0.1 372,841 - SMa0689 0.37 -0.3 372,920 + SMa0689 0.46 +0.0 372,921 - SMa0689 0.46 -2.3 372,921 - SMa0689 0.46 +1.7 372,924 + SMa0689 0.46 +1.2 372,924 + SMa0689 0.46 -0.4 372,925 - SMa0689 0.46 +0.9 372,925 - SMa0689 0.46 -0.3 372,925 - SMa0689 0.46 +0.3 372,925 - SMa0689 0.46 -0.6 372,945 + SMa0689 0.48 +0.7 372,945 + SMa0689 0.48 +0.1 372,945 + SMa0689 0.48 +1.4 372,946 - SMa0689 0.48 -1.3 372,946 - SMa0689 0.48 -0.1 373,020 + SMa0689 0.56 -1.2 373,021 - SMa0689 0.56 +1.9 373,021 - SMa0689 0.56 +2.5
Or see this region's nucleotide sequence