Strain Fitness in Sinorhizobium meliloti 1021 around SMa0610

Experiment: NAG (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa0607 and SMa0609 are separated by 57 nucleotidesSMa0609 and SMa0610 are separated by 5 nucleotidesSMa0610 and SMa0612 are separated by 304 nucleotides SMa0607: SMa0607 - hypothetical protein, at 323,618 to 325,168 SMa0607 SMa0609: SMa0609 - hypothetical protein, at 325,226 to 325,801 SMa0609 SMa0610: SMa0610 - hypothetical protein, at 325,807 to 326,667 SMa0610 SMa0612: SMa0612 - cbb3-type cytochrome c oxidase subunit I, at 326,972 to 328,627 SMa0612 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 324.855 kb on - strand, within SMa0607at 324.867 kb on + strand, within SMa0607at 324.867 kb on + strand, within SMa0607at 324.912 kb on - strand, within SMa0607at 324.912 kb on - strand, within SMa0607at 325.014 kb on + strandat 325.104 kb on - strandat 325.166 kb on + strandat 325.203 kb on + strandat 325.204 kb on - strandat 325.204 kb on - strandat 325.222 kb on + strandat 325.222 kb on + strandat 325.263 kb on + strandat 325.297 kb on + strand, within SMa0609at 325.398 kb on - strand, within SMa0609at 325.604 kb on + strand, within SMa0609at 325.607 kb on + strand, within SMa0609at 325.607 kb on + strand, within SMa0609at 325.638 kb on - strand, within SMa0609at 325.651 kb on + strand, within SMa0609at 325.651 kb on + strand, within SMa0609at 325.652 kb on - strand, within SMa0609at 325.689 kb on - strand, within SMa0609at 325.689 kb on - strand, within SMa0609at 325.766 kb on + strandat 325.767 kb on - strandat 325.767 kb on - strandat 325.791 kb on + strandat 325.791 kb on + strandat 325.799 kb on + strandat 325.799 kb on + strandat 325.800 kb on - strandat 325.800 kb on - strandat 325.800 kb on - strandat 325.838 kb on - strandat 325.948 kb on + strand, within SMa0610at 325.949 kb on - strand, within SMa0610at 325.998 kb on + strand, within SMa0610at 325.999 kb on - strand, within SMa0610at 326.060 kb on + strand, within SMa0610at 326.060 kb on + strand, within SMa0610at 326.242 kb on + strand, within SMa0610at 326.259 kb on - strand, within SMa0610at 326.269 kb on + strand, within SMa0610at 326.269 kb on + strand, within SMa0610at 326.270 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.382 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.390 kb on - strand, within SMa0610at 326.390 kb on - strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.567 kb on - strand, within SMa0610at 326.583 kb on - strandat 326.598 kb on + strandat 326.665 kb on + strandat 326.666 kb on - strandat 326.666 kb on - strandat 326.927 kb on + strandat 326.928 kb on - strandat 326.928 kb on - strandat 327.031 kb on + strandat 327.032 kb on - strandat 327.104 kb on + strandat 327.106 kb on + strandat 327.122 kb on + strandat 327.123 kb on - strandat 327.180 kb on - strand, within SMa0612at 327.180 kb on - strand, within SMa0612at 327.334 kb on + strand, within SMa0612at 327.522 kb on - strand, within SMa0612at 327.540 kb on - strand, within SMa0612at 327.576 kb on - strand, within SMa0612at 327.587 kb on + strand, within SMa0612at 327.587 kb on + strand, within SMa0612at 327.587 kb on + strand, within SMa0612at 327.626 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.644 kb on + strand, within SMa0612at 327.645 kb on - strand, within SMa0612at 327.645 kb on - strand, within SMa0612at 327.645 kb on - strand, within SMa0612at 327.645 kb on - strand, within SMa0612

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
remove
324,855 - SMa0607 0.80 +0.3
324,867 + SMa0607 0.81 -0.6
324,867 + SMa0607 0.81 +0.7
324,912 - SMa0607 0.83 +0.3
324,912 - SMa0607 0.83 -3.6
325,014 + +0.1
325,104 - -1.1
325,166 + -0.0
325,203 + -0.7
325,204 - -0.3
325,204 - -0.2
325,222 + +0.6
325,222 + +0.1
325,263 + +1.7
325,297 + SMa0609 0.12 +0.1
325,398 - SMa0609 0.30 -0.2
325,604 + SMa0609 0.66 +0.6
325,607 + SMa0609 0.66 -0.8
325,607 + SMa0609 0.66 -0.2
325,638 - SMa0609 0.72 -0.8
325,651 + SMa0609 0.74 +2.7
325,651 + SMa0609 0.74 -0.7
325,652 - SMa0609 0.74 +0.5
325,689 - SMa0609 0.80 -0.6
325,689 - SMa0609 0.80 -0.3
325,766 + +1.5
325,767 - -0.6
325,767 - -0.2
325,791 + -0.2
325,791 + -1.3
325,799 + -0.9
325,799 + +1.0
325,800 - -0.6
325,800 - +0.2
325,800 - -2.9
325,838 - +0.0
325,948 + SMa0610 0.16 -0.2
325,949 - SMa0610 0.16 +0.9
325,998 + SMa0610 0.22 +0.4
325,999 - SMa0610 0.22 -1.1
326,060 + SMa0610 0.29 -0.5
326,060 + SMa0610 0.29 +0.1
326,242 + SMa0610 0.51 -0.9
326,259 - SMa0610 0.52 -1.1
326,269 + SMa0610 0.54 -0.7
326,269 + SMa0610 0.54 -0.6
326,270 - SMa0610 0.54 -1.2
326,327 - SMa0610 0.60 -0.6
326,327 - SMa0610 0.60 +0.4
326,327 - SMa0610 0.60 -1.8
326,382 + SMa0610 0.67 -0.2
326,389 + SMa0610 0.68 -0.7
326,389 + SMa0610 0.68 -0.9
326,389 + SMa0610 0.68 -0.8
326,390 - SMa0610 0.68 -0.9
326,390 - SMa0610 0.68 -1.0
326,566 + SMa0610 0.88 -0.6
326,566 + SMa0610 0.88 +0.5
326,566 + SMa0610 0.88 -1.9
326,567 - SMa0610 0.88 +2.1
326,583 - -1.5
326,598 + +1.3
326,665 + +3.0
326,666 - -2.5
326,666 - +1.7
326,927 + -0.3
326,928 - -2.7
326,928 - -0.2
327,031 + +0.2
327,032 - -1.1
327,104 + -0.5
327,106 + -1.0
327,122 + +0.4
327,123 - +0.4
327,180 - SMa0612 0.13 -1.1
327,180 - SMa0612 0.13 -0.2
327,334 + SMa0612 0.22 -0.6
327,522 - SMa0612 0.33 -0.8
327,540 - SMa0612 0.34 -0.5
327,576 - SMa0612 0.36 +0.5
327,587 + SMa0612 0.37 +1.8
327,587 + SMa0612 0.37 +0.7
327,587 + SMa0612 0.37 +5.1
327,626 + SMa0612 0.39 +0.6
327,644 + SMa0612 0.41 -2.5
327,644 + SMa0612 0.41 +2.9
327,644 + SMa0612 0.41 -0.4
327,644 + SMa0612 0.41 -0.2
327,644 + SMa0612 0.41 +0.5
327,644 + SMa0612 0.41 +1.2
327,644 + SMa0612 0.41 +0.0
327,645 - SMa0612 0.41 -0.2
327,645 - SMa0612 0.41 -1.0
327,645 - SMa0612 0.41 +1.7
327,645 - SMa0612 0.41 +2.4

Or see this region's nucleotide sequence