Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0360 and SMa0364 are separated by 588 nucleotides SMa0364 and SMa0367 are separated by 45 nucleotides
SMa0360: SMa0360 - transposase, at 193,804 to 194,493
SMa0360
SMa0364: SMa0364 - hypothetical protein, at 195,082 to 196,866
SMa0364
SMa0367: SMa0367 - hypothetical protein, at 196,912 to 197,808
SMa0367
Position (kb) 195
196
197 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 194.196 kb on - strand, within SMa0360 at 194.322 kb on + strand, within SMa0360 at 194.512 kb on + strand at 194.513 kb on - strand at 194.537 kb on + strand at 194.537 kb on + strand at 194.538 kb on - strand at 194.558 kb on + strand at 194.558 kb on + strand at 194.558 kb on + strand at 194.659 kb on - strand at 194.700 kb on + strand at 194.700 kb on + strand at 194.701 kb on - strand at 194.701 kb on - strand at 194.703 kb on + strand at 194.703 kb on + strand at 194.778 kb on - strand at 194.856 kb on - strand at 194.856 kb on - strand at 194.906 kb on - strand at 194.906 kb on - strand at 194.913 kb on + strand at 194.914 kb on - strand at 194.914 kb on - strand at 194.939 kb on + strand at 194.940 kb on - strand at 194.940 kb on - strand at 194.940 kb on - strand at 194.962 kb on - strand at 195.135 kb on + strand at 195.576 kb on - strand, within SMa0364 at 195.576 kb on - strand, within SMa0364 at 195.719 kb on + strand, within SMa0364 at 195.720 kb on - strand, within SMa0364 at 195.720 kb on - strand, within SMa0364 at 195.723 kb on - strand, within SMa0364 at 195.723 kb on - strand, within SMa0364 at 195.767 kb on + strand, within SMa0364 at 195.767 kb on + strand, within SMa0364 at 195.948 kb on + strand, within SMa0364 at 195.949 kb on - strand, within SMa0364 at 196.020 kb on + strand, within SMa0364 at 196.021 kb on - strand, within SMa0364 at 196.047 kb on + strand, within SMa0364 at 196.048 kb on - strand, within SMa0364 at 196.048 kb on - strand, within SMa0364 at 196.194 kb on + strand, within SMa0364 at 196.194 kb on + strand, within SMa0364 at 196.194 kb on + strand, within SMa0364 at 196.195 kb on - strand, within SMa0364 at 196.195 kb on - strand, within SMa0364 at 196.731 kb on + strand at 196.744 kb on - strand at 196.865 kb on - strand at 196.927 kb on + strand at 197.065 kb on - strand, within SMa0367 at 197.199 kb on + strand, within SMa0367 at 197.199 kb on + strand, within SMa0367 at 197.199 kb on + strand, within SMa0367 at 197.200 kb on - strand, within SMa0367 at 197.315 kb on + strand, within SMa0367 at 197.492 kb on + strand, within SMa0367 at 197.537 kb on + strand, within SMa0367 at 197.718 kb on - strand, within SMa0367 at 197.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 194,196 - SMa0360 0.57 -0.4 194,322 + SMa0360 0.75 +0.6 194,512 + -0.8 194,513 - +1.7 194,537 + +0.1 194,537 + -0.7 194,538 - +0.6 194,558 + -0.6 194,558 + +0.2 194,558 + -0.1 194,659 - -0.0 194,700 + -0.4 194,700 + +0.7 194,701 - -0.8 194,701 - -0.2 194,703 + -1.0 194,703 + +3.0 194,778 - -1.0 194,856 - +0.7 194,856 - -0.3 194,906 - -0.7 194,906 - -0.5 194,913 + -1.4 194,914 - -3.7 194,914 - +0.7 194,939 + +0.8 194,940 - +0.6 194,940 - +2.1 194,940 - +0.1 194,962 - -0.9 195,135 + -3.9 195,576 - SMa0364 0.28 -1.9 195,576 - SMa0364 0.28 -0.6 195,719 + SMa0364 0.36 -0.6 195,720 - SMa0364 0.36 -0.2 195,720 - SMa0364 0.36 -0.1 195,723 - SMa0364 0.36 -0.3 195,723 - SMa0364 0.36 +1.6 195,767 + SMa0364 0.38 -2.3 195,767 + SMa0364 0.38 -1.2 195,948 + SMa0364 0.49 -3.7 195,949 - SMa0364 0.49 -0.3 196,020 + SMa0364 0.53 +0.4 196,021 - SMa0364 0.53 +3.3 196,047 + SMa0364 0.54 -0.8 196,048 - SMa0364 0.54 -0.5 196,048 - SMa0364 0.54 +0.3 196,194 + SMa0364 0.62 +0.2 196,194 + SMa0364 0.62 -0.8 196,194 + SMa0364 0.62 -0.2 196,195 - SMa0364 0.62 -0.0 196,195 - SMa0364 0.62 -1.3 196,731 + -0.3 196,744 - -1.1 196,865 - -0.9 196,927 + -0.1 197,065 - SMa0367 0.17 -0.8 197,199 + SMa0367 0.32 -0.2 197,199 + SMa0367 0.32 -0.8 197,199 + SMa0367 0.32 -0.9 197,200 - SMa0367 0.32 +0.6 197,315 + SMa0367 0.45 +1.6 197,492 + SMa0367 0.65 -0.5 197,537 + SMa0367 0.70 -1.3 197,718 - SMa0367 0.90 -0.9 197,723 - +0.2
Or see this region's nucleotide sequence