Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0265 and SMa0267 are separated by 94 nucleotides SMa0267 and SMa0270 overlap by 4 nucleotides SMa0270 and SMa0271 overlap by 35 nucleotides SMa0271 and SMa0273 are separated by 29 nucleotides
SMa0265: SMa0265 - dehydrogenase, at 149,384 to 150,388
SMa0265
SMa0267: SMa0267 - GntR family transcriptional regulator, at 150,483 to 151,175
SMa0267
SMa0270: SMa0270 - ABC transporter ATP-binding protein, at 151,172 to 152,764
SMa0270
SMa0271: SMa0271 - ABC transporter permease, at 152,730 to 153,725
SMa0271
SMa0273: SMa0273 - ABC transporter substrate-binding protein, at 153,755 to 154,720
SMa0273
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 150.461 kb on + strand at 150.469 kb on + strand at 150.487 kb on + strand at 150.558 kb on + strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.581 kb on + strand, within SMa0267 at 150.593 kb on + strand, within SMa0267 at 150.594 kb on - strand, within SMa0267 at 150.725 kb on + strand, within SMa0267 at 150.726 kb on - strand, within SMa0267 at 150.821 kb on + strand, within SMa0267 at 150.897 kb on - strand, within SMa0267 at 150.906 kb on + strand, within SMa0267 at 151.114 kb on - strand at 151.260 kb on - strand at 151.465 kb on - strand, within SMa0270 at 151.720 kb on + strand, within SMa0270 at 151.721 kb on - strand, within SMa0270 at 151.802 kb on + strand, within SMa0270 at 151.802 kb on + strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.952 kb on + strand, within SMa0270 at 151.960 kb on + strand, within SMa0270 at 152.194 kb on - strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.213 kb on + strand, within SMa0270 at 152.214 kb on - strand, within SMa0270 at 152.214 kb on - strand, within SMa0270 at 152.269 kb on + strand, within SMa0270 at 152.270 kb on - strand, within SMa0270 at 152.293 kb on + strand, within SMa0270 at 152.430 kb on + strand, within SMa0270 at 152.430 kb on + strand, within SMa0270 at 152.523 kb on - strand, within SMa0270 at 152.596 kb on - strand, within SMa0270 at 152.684 kb on + strand at 152.762 kb on + strand at 152.763 kb on - strand at 152.824 kb on + strand at 152.824 kb on + strand at 152.825 kb on - strand at 152.825 kb on - strand at 153.104 kb on + strand, within SMa0271 at 153.232 kb on - strand, within SMa0271 at 153.233 kb on + strand, within SMa0271 at 153.234 kb on - strand, within SMa0271 at 153.234 kb on - strand, within SMa0271 at 153.244 kb on - strand, within SMa0271 at 153.322 kb on - strand, within SMa0271 at 153.333 kb on + strand, within SMa0271 at 153.334 kb on - strand, within SMa0271 at 153.334 kb on - strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.463 kb on - strand, within SMa0271 at 153.463 kb on - strand, within SMa0271 at 153.651 kb on + strand at 153.651 kb on + strand at 153.711 kb on - strand at 153.763 kb on + strand at 153.763 kb on + strand at 153.764 kb on - strand at 153.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 150,461 + +0.1 150,469 + +0.1 150,487 + -0.8 150,558 + SMa0267 0.11 -1.1 150,571 - SMa0267 0.13 +0.5 150,571 - SMa0267 0.13 +0.7 150,571 - SMa0267 0.13 +0.8 150,571 - SMa0267 0.13 -0.5 150,581 + SMa0267 0.14 -1.2 150,593 + SMa0267 0.16 +4.1 150,594 - SMa0267 0.16 -1.0 150,725 + SMa0267 0.35 -0.7 150,726 - SMa0267 0.35 -0.2 150,821 + SMa0267 0.49 +0.3 150,897 - SMa0267 0.60 -1.6 150,906 + SMa0267 0.61 -1.3 151,114 - +1.4 151,260 - -0.8 151,465 - SMa0270 0.18 +2.2 151,720 + SMa0270 0.34 -0.3 151,721 - SMa0270 0.34 -0.2 151,802 + SMa0270 0.40 +0.8 151,802 + SMa0270 0.40 -0.6 151,803 - SMa0270 0.40 -0.5 151,803 - SMa0270 0.40 +1.2 151,803 - SMa0270 0.40 -0.5 151,952 + SMa0270 0.49 -1.1 151,960 + SMa0270 0.49 +0.6 152,194 - SMa0270 0.64 -0.6 152,213 + SMa0270 0.65 -2.2 152,213 + SMa0270 0.65 -0.4 152,213 + SMa0270 0.65 -1.6 152,214 - SMa0270 0.65 -2.2 152,214 - SMa0270 0.65 +0.7 152,269 + SMa0270 0.69 -0.9 152,270 - SMa0270 0.69 -0.7 152,293 + SMa0270 0.70 -0.2 152,430 + SMa0270 0.79 -0.5 152,430 + SMa0270 0.79 -0.8 152,523 - SMa0270 0.85 -1.7 152,596 - SMa0270 0.89 -0.5 152,684 + -1.5 152,762 + -1.2 152,763 - -1.5 152,824 + +1.0 152,824 + -1.7 152,825 - -0.2 152,825 - +5.1 153,104 + SMa0271 0.38 +0.7 153,232 - SMa0271 0.50 +0.5 153,233 + SMa0271 0.51 -1.3 153,234 - SMa0271 0.51 -0.2 153,234 - SMa0271 0.51 +0.1 153,244 - SMa0271 0.52 +0.2 153,322 - SMa0271 0.59 -1.0 153,333 + SMa0271 0.61 +2.8 153,334 - SMa0271 0.61 +0.1 153,334 - SMa0271 0.61 -0.4 153,462 + SMa0271 0.73 -2.1 153,462 + SMa0271 0.73 +1.5 153,462 + SMa0271 0.73 +0.5 153,463 - SMa0271 0.74 +0.3 153,463 - SMa0271 0.74 -1.6 153,651 + -0.6 153,651 + -1.7 153,711 - -0.3 153,763 + +0.3 153,763 + -0.3 153,764 - -0.2 153,764 - +0.2
Or see this region's nucleotide sequence