Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0252 and SMa0254 are separated by 163 nucleotides SMa0254 and SMa0255 are separated by 129 nucleotides SMa0255 and SMa0257 are separated by 168 nucleotides
SMa0252: SMa0252 - TRAP-type periplasmic solute-binding protein, at 140,349 to 141,353
SMa0252
SMa0254: SMa0254 - hypothetical protein, at 141,517 to 142,197
SMa0254
SMa0255: SMa0255 - DNA polymerase III subunit epsilon, at 142,327 to 143,304
SMa0255
SMa0257: SMa0257 - methylamine, at 143,473 to 145,566
SMa0257
Position (kb)
142
143
144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 141.393 kb on + strand at 141.393 kb on + strand at 141.394 kb on - strand at 141.394 kb on - strand at 141.462 kb on + strand at 141.483 kb on + strand at 141.503 kb on - strand at 141.532 kb on + strand at 141.532 kb on + strand at 141.568 kb on + strand at 141.569 kb on - strand at 141.677 kb on + strand, within SMa0254 at 141.762 kb on + strand, within SMa0254 at 141.971 kb on - strand, within SMa0254 at 141.971 kb on - strand, within SMa0254 at 142.064 kb on + strand, within SMa0254 at 142.081 kb on + strand, within SMa0254 at 142.168 kb on - strand at 142.168 kb on - strand at 142.311 kb on + strand at 142.576 kb on - strand, within SMa0255 at 142.646 kb on + strand, within SMa0255 at 142.655 kb on - strand, within SMa0255 at 142.655 kb on - strand, within SMa0255 at 142.749 kb on + strand, within SMa0255 at 142.750 kb on - strand, within SMa0255 at 142.924 kb on + strand, within SMa0255 at 142.925 kb on - strand, within SMa0255 at 142.946 kb on - strand, within SMa0255 at 142.970 kb on + strand, within SMa0255 at 142.970 kb on + strand, within SMa0255 at 142.971 kb on - strand, within SMa0255 at 143.048 kb on - strand, within SMa0255 at 143.178 kb on - strand, within SMa0255 at 143.178 kb on - strand, within SMa0255 at 143.233 kb on + strand at 143.233 kb on + strand at 143.302 kb on + strand at 143.303 kb on - strand at 143.303 kb on - strand at 143.307 kb on + strand at 143.308 kb on - strand at 143.493 kb on - strand at 143.506 kb on - strand at 143.553 kb on - strand at 143.564 kb on + strand at 143.580 kb on - strand at 143.770 kb on + strand, within SMa0257 at 143.771 kb on - strand, within SMa0257 at 143.853 kb on + strand, within SMa0257 at 143.854 kb on - strand, within SMa0257 at 143.966 kb on + strand, within SMa0257 at 143.966 kb on + strand, within SMa0257 at 143.967 kb on - strand, within SMa0257 at 143.967 kb on - strand, within SMa0257 at 144.163 kb on + strand, within SMa0257 at 144.164 kb on - strand, within SMa0257 at 144.195 kb on - strand, within SMa0257 at 144.195 kb on - strand, within SMa0257 at 144.195 kb on - strand, within SMa0257
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 141,393 + -0.2 141,393 + -1.0 141,394 - +0.2 141,394 - +0.8 141,462 + +0.1 141,483 + -0.2 141,503 - -0.8 141,532 + -0.1 141,532 + -0.3 141,568 + -0.4 141,569 - -1.2 141,677 + SMa0254 0.23 -0.1 141,762 + SMa0254 0.36 +0.5 141,971 - SMa0254 0.67 -0.4 141,971 - SMa0254 0.67 -1.8 142,064 + SMa0254 0.80 -1.1 142,081 + SMa0254 0.83 -0.3 142,168 - -2.0 142,168 - +3.4 142,311 + -0.9 142,576 - SMa0255 0.25 -0.7 142,646 + SMa0255 0.33 -1.1 142,655 - SMa0255 0.34 -0.7 142,655 - SMa0255 0.34 -0.4 142,749 + SMa0255 0.43 -0.8 142,750 - SMa0255 0.43 +1.4 142,924 + SMa0255 0.61 -1.5 142,925 - SMa0255 0.61 -0.5 142,946 - SMa0255 0.63 +0.8 142,970 + SMa0255 0.66 +0.0 142,970 + SMa0255 0.66 -1.9 142,971 - SMa0255 0.66 -0.6 143,048 - SMa0255 0.74 +0.3 143,178 - SMa0255 0.87 -1.4 143,178 - SMa0255 0.87 +1.8 143,233 + +0.3 143,233 + -0.1 143,302 + -0.3 143,303 - -0.3 143,303 - +0.7 143,307 + -0.7 143,308 - -1.7 143,493 - -0.2 143,506 - -0.5 143,553 - -1.5 143,564 + -0.4 143,580 - -0.5 143,770 + SMa0257 0.14 +0.2 143,771 - SMa0257 0.14 -0.4 143,853 + SMa0257 0.18 +0.2 143,854 - SMa0257 0.18 -0.9 143,966 + SMa0257 0.24 -0.6 143,966 + SMa0257 0.24 +2.3 143,967 - SMa0257 0.24 +0.0 143,967 - SMa0257 0.24 -1.0 144,163 + SMa0257 0.33 +1.3 144,164 - SMa0257 0.33 -0.8 144,195 - SMa0257 0.34 -0.7 144,195 - SMa0257 0.34 +0.3 144,195 - SMa0257 0.34 -1.0
Or see this region's nucleotide sequence