Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0118 and SMa0121 are separated by 284 nucleotides SMa0121 and SMa0123 are separated by 70 nucleotides SMa0123 and SMa0124 are separated by 79 nucleotides SMa0124 and SMa0125 are separated by 47 nucleotides SMa0125 and SMa0126 are separated by 613 nucleotides
SMa0118: SMa0118 - hypothetical protein, at 64,679 to 65,206
SMa0118
SMa0121: SMa0121 - hypothetical protein, at 65,491 to 65,658
SMa0121
SMa0123: SMa0123 - hypothetical protein, at 65,729 to 66,112
SMa0123
SMa0124: SMa0124 - molecular chaperone GroEL, at 66,192 to 67,826
SMa0124
SMa0125: SMa0125 - co-chaperonin GroES, at 67,874 to 68,191
SMa0125
SMa0126: SMa0126 - CspA8 Cold shock family protein, at 68,805 to 69,014
SMa0126
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 65.331 kb on - strand at 65.484 kb on + strand at 65.484 kb on + strand at 65.484 kb on + strand at 65.484 kb on + strand at 65.485 kb on - strand at 65.485 kb on - strand at 65.485 kb on - strand at 65.585 kb on - strand, within SMa0121 at 65.595 kb on + strand, within SMa0121 at 65.596 kb on - strand, within SMa0121 at 65.835 kb on + strand, within SMa0123 at 65.835 kb on + strand, within SMa0123 at 66.044 kb on + strand, within SMa0123 at 66.045 kb on - strand, within SMa0123 at 66.069 kb on + strand, within SMa0123 at 66.069 kb on + strand, within SMa0123 at 66.197 kb on - strand at 66.203 kb on + strand at 66.204 kb on - strand at 66.204 kb on - strand at 66.204 kb on - strand at 66.204 kb on - strand at 66.255 kb on - strand at 66.363 kb on - strand, within SMa0124 at 66.363 kb on - strand, within SMa0124 at 66.370 kb on + strand, within SMa0124 at 66.370 kb on + strand, within SMa0124 at 66.371 kb on - strand, within SMa0124 at 66.620 kb on + strand, within SMa0124 at 66.748 kb on + strand, within SMa0124 at 66.881 kb on + strand, within SMa0124 at 67.121 kb on + strand, within SMa0124 at 67.172 kb on - strand, within SMa0124 at 67.172 kb on - strand, within SMa0124 at 67.172 kb on - strand, within SMa0124 at 67.172 kb on - strand, within SMa0124 at 67.232 kb on - strand, within SMa0124 at 67.480 kb on - strand, within SMa0124 at 67.597 kb on - strand, within SMa0124 at 67.597 kb on - strand, within SMa0124 at 67.679 kb on + strand at 67.697 kb on - strand at 67.809 kb on + strand at 67.809 kb on + strand at 67.810 kb on - strand at 67.810 kb on - strand at 67.853 kb on + strand at 67.854 kb on - strand at 67.946 kb on + strand, within SMa0125 at 67.946 kb on + strand, within SMa0125 at 67.947 kb on - strand, within SMa0125 at 67.947 kb on - strand, within SMa0125 at 68.029 kb on + strand, within SMa0125 at 68.214 kb on + strand at 68.214 kb on + strand at 68.215 kb on - strand at 68.216 kb on + strand at 68.217 kb on - strand at 68.239 kb on - strand at 68.262 kb on - strand at 68.307 kb on + strand at 68.352 kb on + strand at 68.409 kb on - strand at 68.484 kb on - strand at 68.498 kb on + strand at 68.584 kb on + strand at 68.585 kb on - strand at 68.585 kb on - strand at 68.678 kb on + strand at 68.679 kb on - strand at 68.694 kb on - strand at 68.781 kb on + strand at 68.781 kb on + strand at 68.782 kb on - strand at 68.804 kb on + strand at 68.822 kb on + strand at 68.822 kb on + strand at 68.823 kb on - strand at 68.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 65,331 - +3.4 65,484 + +0.2 65,484 + -0.1 65,484 + -0.4 65,484 + -0.1 65,485 - +0.4 65,485 - +0.2 65,485 - +0.3 65,585 - SMa0121 0.56 +0.7 65,595 + SMa0121 0.62 -0.0 65,596 - SMa0121 0.62 -1.4 65,835 + SMa0123 0.28 +0.5 65,835 + SMa0123 0.28 +0.5 66,044 + SMa0123 0.82 +1.0 66,045 - SMa0123 0.82 -2.0 66,069 + SMa0123 0.89 +0.9 66,069 + SMa0123 0.89 -0.4 66,197 - -0.2 66,203 + +0.7 66,204 - -0.5 66,204 - -0.2 66,204 - +0.2 66,204 - -1.1 66,255 - -0.2 66,363 - SMa0124 0.10 -0.2 66,363 - SMa0124 0.10 +0.5 66,370 + SMa0124 0.11 +0.2 66,370 + SMa0124 0.11 -0.4 66,371 - SMa0124 0.11 +0.9 66,620 + SMa0124 0.26 -0.8 66,748 + SMa0124 0.34 -3.1 66,881 + SMa0124 0.42 -0.6 67,121 + SMa0124 0.57 -1.8 67,172 - SMa0124 0.60 -3.7 67,172 - SMa0124 0.60 -0.6 67,172 - SMa0124 0.60 +0.1 67,172 - SMa0124 0.60 -2.0 67,232 - SMa0124 0.64 -0.4 67,480 - SMa0124 0.79 +0.9 67,597 - SMa0124 0.86 +0.3 67,597 - SMa0124 0.86 -2.2 67,679 + +0.0 67,697 - +0.2 67,809 + +0.1 67,809 + +0.8 67,810 - -0.1 67,810 - +0.8 67,853 + +0.4 67,854 - -0.1 67,946 + SMa0125 0.23 +2.4 67,946 + SMa0125 0.23 +0.4 67,947 - SMa0125 0.23 -1.2 67,947 - SMa0125 0.23 -1.1 68,029 + SMa0125 0.49 +1.1 68,214 + -0.6 68,214 + -0.1 68,215 - -1.0 68,216 + -1.1 68,217 - +0.2 68,239 - +0.7 68,262 - -0.0 68,307 + -2.0 68,352 + +0.2 68,409 - +1.0 68,484 - +1.1 68,498 + -0.8 68,584 + -0.4 68,585 - -0.5 68,585 - +0.6 68,678 + -0.5 68,679 - -0.3 68,694 - +1.0 68,781 + -0.2 68,781 + -0.4 68,782 - +0.3 68,804 + -0.1 68,822 + +1.8 68,822 + -0.1 68,823 - +2.2 68,823 - +0.8
Or see this region's nucleotide sequence