Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0072 and SMa0074 are separated by 7 nucleotides SMa0074 and SMa0077 overlap by 1 nucleotides SMa0077 and SMa0078 are separated by 241 nucleotides
SMa0072: SMa0072 - ABC transporter ATP-binding protein, at 38,333 to 39,064
SMa0072
SMa0074: SMa0074 - 3-ketoacyl-ACP reductase, at 39,072 to 39,830
SMa0074
SMa0077: SMa0077 - hypothetical protein, at 39,830 to 40,717
SMa0077
SMa0078: SMa0078 - LacI family transcriptional regulator, at 40,959 to 41,981
SMa0078
Position (kb) 39
40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 39.255 kb on + strand, within SMa0074 at 39.255 kb on + strand, within SMa0074 at 39.256 kb on - strand, within SMa0074 at 39.276 kb on - strand, within SMa0074 at 39.280 kb on + strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.305 kb on + strand, within SMa0074 at 39.400 kb on - strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.535 kb on - strand, within SMa0074 at 39.535 kb on - strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.544 kb on - strand, within SMa0074 at 39.544 kb on - strand, within SMa0074 at 39.547 kb on + strand, within SMa0074 at 39.547 kb on + strand, within SMa0074 at 39.548 kb on - strand, within SMa0074 at 39.548 kb on - strand, within SMa0074 at 39.690 kb on + strand, within SMa0074 at 39.690 kb on + strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 40.083 kb on + strand, within SMa0077 at 40.083 kb on + strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.084 kb on - strand, within SMa0077 at 40.209 kb on - strand, within SMa0077 at 40.216 kb on - strand, within SMa0077 at 40.392 kb on + strand, within SMa0077 at 40.547 kb on + strand, within SMa0077 at 40.547 kb on + strand, within SMa0077 at 40.620 kb on + strand, within SMa0077 at 40.847 kb on + strand at 40.921 kb on + strand at 40.921 kb on + strand at 40.922 kb on - strand at 40.922 kb on - strand at 40.924 kb on - strand at 40.924 kb on - strand at 41.118 kb on + strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.119 kb on - strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.124 kb on + strand, within SMa0078 at 41.125 kb on - strand, within SMa0078 at 41.125 kb on - strand, within SMa0078 at 41.274 kb on - strand, within SMa0078 at 41.389 kb on + strand, within SMa0078 at 41.390 kb on - strand, within SMa0078 at 41.419 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.448 kb on + strand, within SMa0078 at 41.449 kb on - strand, within SMa0078 at 41.463 kb on + strand, within SMa0078 at 41.464 kb on - strand, within SMa0078 at 41.685 kb on - strand, within SMa0078 at 41.685 kb on - strand, within SMa0078
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 39,255 + SMa0074 0.24 -0.1 39,255 + SMa0074 0.24 -0.8 39,256 - SMa0074 0.24 +0.3 39,276 - SMa0074 0.27 -0.0 39,280 + SMa0074 0.27 +0.0 39,281 - SMa0074 0.28 -0.6 39,281 - SMa0074 0.28 -0.4 39,305 + SMa0074 0.31 -0.4 39,400 - SMa0074 0.43 +0.4 39,534 + SMa0074 0.61 -0.6 39,534 + SMa0074 0.61 +0.4 39,534 + SMa0074 0.61 -2.7 39,535 - SMa0074 0.61 -0.0 39,535 - SMa0074 0.61 +0.1 39,543 + SMa0074 0.62 +0.3 39,543 + SMa0074 0.62 +2.0 39,543 + SMa0074 0.62 -0.8 39,544 - SMa0074 0.62 +0.2 39,544 - SMa0074 0.62 +0.1 39,547 + SMa0074 0.63 +0.9 39,547 + SMa0074 0.63 +0.9 39,548 - SMa0074 0.63 -0.8 39,548 - SMa0074 0.63 -0.3 39,690 + SMa0074 0.81 +0.5 39,690 + SMa0074 0.81 -0.8 39,691 - SMa0074 0.82 +0.3 39,691 - SMa0074 0.82 -0.2 39,691 - SMa0074 0.82 -0.1 39,691 - SMa0074 0.82 -0.7 40,083 + SMa0077 0.28 +0.8 40,083 + SMa0077 0.28 -1.2 40,084 - SMa0077 0.29 +1.6 40,084 - SMa0077 0.29 -0.9 40,084 - SMa0077 0.29 +0.8 40,084 - SMa0077 0.29 -2.8 40,084 - SMa0077 0.29 -0.2 40,209 - SMa0077 0.43 -0.2 40,216 - SMa0077 0.43 -0.7 40,392 + SMa0077 0.63 +1.0 40,547 + SMa0077 0.81 +0.4 40,547 + SMa0077 0.81 -0.9 40,620 + SMa0077 0.89 +1.1 40,847 + -2.0 40,921 + -1.2 40,921 + -2.9 40,922 - +0.8 40,922 - -2.3 40,924 - -1.4 40,924 - -1.1 41,118 + SMa0078 0.16 -2.7 41,119 - SMa0078 0.16 -1.4 41,119 - SMa0078 0.16 -3.8 41,119 - SMa0078 0.16 +0.1 41,119 - SMa0078 0.16 -1.5 41,124 + SMa0078 0.16 -1.8 41,124 + SMa0078 0.16 -0.4 41,124 + SMa0078 0.16 -2.4 41,124 + SMa0078 0.16 -2.8 41,125 - SMa0078 0.16 -1.7 41,125 - SMa0078 0.16 -1.4 41,274 - SMa0078 0.31 -3.9 41,389 + SMa0078 0.42 -2.9 41,390 - SMa0078 0.42 +0.1 41,419 + SMa0078 0.45 -1.4 41,448 + SMa0078 0.48 -0.9 41,448 + SMa0078 0.48 -0.0 41,448 + SMa0078 0.48 -0.0 41,448 + SMa0078 0.48 -2.1 41,448 + SMa0078 0.48 -1.1 41,449 - SMa0078 0.48 +0.2 41,463 + SMa0078 0.49 -2.1 41,464 - SMa0078 0.49 -2.3 41,685 - SMa0078 0.71 -1.0 41,685 - SMa0078 0.71 -0.6
Or see this region's nucleotide sequence