Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0036 and SMa0039 are separated by 346 nucleotides SMa0039 and SMa0041 are separated by 101 nucleotides
SMa0036: SMa0036 - ABC transporter ATP-binding protein, at 21,429 to 23,051
SMa0036
SMa0039: SMa0039 - LysR family transcriptional regulator, at 23,398 to 24,297
SMa0039
SMa0041: SMa0041 - quinone oxidoreductase, at 24,399 to 25,388
SMa0041
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 22.428 kb on + strand, within SMa0036 at 22.428 kb on + strand, within SMa0036 at 22.428 kb on + strand, within SMa0036 at 22.429 kb on - strand, within SMa0036 at 22.429 kb on - strand, within SMa0036 at 22.447 kb on - strand, within SMa0036 at 22.515 kb on - strand, within SMa0036 at 22.599 kb on + strand, within SMa0036 at 22.599 kb on + strand, within SMa0036 at 22.857 kb on - strand, within SMa0036 at 22.890 kb on + strand at 22.964 kb on + strand at 22.964 kb on + strand at 22.964 kb on + strand at 22.964 kb on + strand at 22.964 kb on + strand at 22.965 kb on - strand at 22.986 kb on + strand at 23.008 kb on - strand at 23.008 kb on - strand at 23.008 kb on - strand at 23.008 kb on - strand at 23.201 kb on + strand at 23.201 kb on + strand at 23.203 kb on + strand at 23.255 kb on - strand at 23.255 kb on - strand at 23.277 kb on - strand at 23.308 kb on + strand at 23.308 kb on + strand at 23.498 kb on + strand, within SMa0039 at 23.498 kb on + strand, within SMa0039 at 23.499 kb on - strand, within SMa0039 at 23.783 kb on + strand, within SMa0039 at 23.783 kb on + strand, within SMa0039 at 23.872 kb on - strand, within SMa0039 at 24.006 kb on + strand, within SMa0039 at 24.006 kb on + strand, within SMa0039 at 24.007 kb on - strand, within SMa0039 at 24.101 kb on + strand, within SMa0039 at 24.102 kb on - strand, within SMa0039 at 24.102 kb on - strand, within SMa0039 at 24.104 kb on + strand, within SMa0039 at 24.105 kb on - strand, within SMa0039 at 24.110 kb on + strand, within SMa0039 at 24.110 kb on + strand, within SMa0039 at 24.111 kb on - strand, within SMa0039 at 24.153 kb on + strand, within SMa0039 at 24.154 kb on - strand, within SMa0039 at 24.154 kb on - strand, within SMa0039 at 24.551 kb on + strand, within SMa0041 at 24.552 kb on + strand, within SMa0041 at 24.552 kb on + strand, within SMa0041 at 24.552 kb on + strand, within SMa0041 at 24.553 kb on - strand, within SMa0041 at 24.553 kb on - strand, within SMa0041 at 24.553 kb on - strand, within SMa0041 at 24.553 kb on - strand, within SMa0041 at 24.696 kb on + strand, within SMa0041 at 24.913 kb on + strand, within SMa0041 at 25.064 kb on - strand, within SMa0041 at 25.114 kb on + strand, within SMa0041 at 25.115 kb on - strand, within SMa0041 at 25.200 kb on + strand, within SMa0041 at 25.204 kb on + strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 22,428 + SMa0036 0.62 +0.8 22,428 + SMa0036 0.62 -0.6 22,428 + SMa0036 0.62 -0.7 22,429 - SMa0036 0.62 +0.0 22,429 - SMa0036 0.62 -0.1 22,447 - SMa0036 0.63 +0.1 22,515 - SMa0036 0.67 +0.1 22,599 + SMa0036 0.72 -1.0 22,599 + SMa0036 0.72 -0.5 22,857 - SMa0036 0.88 -0.2 22,890 + -1.4 22,964 + +0.2 22,964 + -2.1 22,964 + -1.2 22,964 + -0.9 22,964 + -0.1 22,965 - +2.5 22,986 + -1.5 23,008 - -0.4 23,008 - -0.5 23,008 - -1.0 23,008 - +3.7 23,201 + +0.8 23,201 + +3.5 23,203 + -0.6 23,255 - -1.3 23,255 - +0.2 23,277 - -0.2 23,308 + -1.9 23,308 + -0.3 23,498 + SMa0039 0.11 -1.2 23,498 + SMa0039 0.11 -0.2 23,499 - SMa0039 0.11 -1.4 23,783 + SMa0039 0.43 -1.3 23,783 + SMa0039 0.43 -0.3 23,872 - SMa0039 0.53 +0.7 24,006 + SMa0039 0.68 -1.0 24,006 + SMa0039 0.68 +0.4 24,007 - SMa0039 0.68 -0.9 24,101 + SMa0039 0.78 +1.7 24,102 - SMa0039 0.78 -0.8 24,102 - SMa0039 0.78 -0.2 24,104 + SMa0039 0.78 +0.4 24,105 - SMa0039 0.79 -0.9 24,110 + SMa0039 0.79 -0.7 24,110 + SMa0039 0.79 -1.0 24,111 - SMa0039 0.79 -0.2 24,153 + SMa0039 0.84 -0.1 24,154 - SMa0039 0.84 +0.2 24,154 - SMa0039 0.84 -0.2 24,551 + SMa0041 0.15 -0.8 24,552 + SMa0041 0.15 +2.3 24,552 + SMa0041 0.15 +1.8 24,552 + SMa0041 0.15 +0.2 24,553 - SMa0041 0.16 +0.1 24,553 - SMa0041 0.16 +0.5 24,553 - SMa0041 0.16 +0.2 24,553 - SMa0041 0.16 -0.1 24,696 + SMa0041 0.30 +0.5 24,913 + SMa0041 0.52 -1.5 25,064 - SMa0041 0.67 -1.4 25,114 + SMa0041 0.72 +0.2 25,115 - SMa0041 0.72 +1.2 25,200 + SMa0041 0.81 -1.2 25,204 + SMa0041 0.81 -1.4 25,205 - SMa0041 0.81 -0.3 25,205 - SMa0041 0.81 -0.0 25,205 - SMa0041 0.81 +1.4 25,205 - SMa0041 0.81 -2.1 25,205 - SMa0041 0.81 +1.1
Or see this region's nucleotide sequence