Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21420

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21419 and SM_b21684 are separated by 21 nucleotidesSM_b21684 and SM_b21420 overlap by 4 nucleotidesSM_b21420 and SM_b21421 are separated by 73 nucleotides SM_b21419: SM_b21419 - AraC family transcriptional regulator, at 1,349,044 to 1,349,931 _b21419 SM_b21684: SM_b21684 - hypothetical protein, at 1,349,953 to 1,350,180 _b21684 SM_b21420: SM_b21420 - L-arabinose isomerase, at 1,350,177 to 1,351,604 _b21420 SM_b21421: SM_b21421 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,351,678 to 1,352,739 _b21421 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1349.178 kb on + strand, within SM_b21419at 1349.178 kb on + strand, within SM_b21419at 1349.260 kb on + strand, within SM_b21419at 1349.261 kb on - strand, within SM_b21419at 1349.274 kb on - strand, within SM_b21419at 1349.279 kb on + strand, within SM_b21419at 1349.279 kb on + strand, within SM_b21419at 1349.280 kb on - strand, within SM_b21419at 1349.280 kb on - strand, within SM_b21419at 1349.413 kb on + strand, within SM_b21419at 1349.413 kb on + strand, within SM_b21419at 1349.443 kb on + strand, within SM_b21419at 1349.444 kb on - strand, within SM_b21419at 1349.444 kb on - strand, within SM_b21419at 1349.444 kb on - strand, within SM_b21419at 1349.551 kb on + strand, within SM_b21419at 1349.552 kb on - strand, within SM_b21419at 1349.552 kb on - strand, within SM_b21419at 1349.597 kb on - strand, within SM_b21419at 1349.836 kb on + strand, within SM_b21419at 1349.903 kb on + strandat 1350.010 kb on - strand, within SM_b21684at 1350.093 kb on + strand, within SM_b21684at 1350.093 kb on + strand, within SM_b21684at 1350.093 kb on + strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.228 kb on + strandat 1350.229 kb on - strandat 1350.229 kb on - strandat 1350.270 kb on + strandat 1350.270 kb on + strandat 1350.271 kb on - strandat 1350.271 kb on - strandat 1350.271 kb on - strandat 1350.354 kb on + strand, within SM_b21420at 1350.354 kb on + strand, within SM_b21420at 1350.355 kb on - strand, within SM_b21420at 1350.355 kb on - strand, within SM_b21420at 1350.392 kb on + strand, within SM_b21420at 1350.393 kb on - strand, within SM_b21420at 1350.397 kb on + strand, within SM_b21420at 1350.397 kb on + strand, within SM_b21420at 1350.398 kb on - strand, within SM_b21420at 1350.398 kb on - strand, within SM_b21420at 1350.398 kb on - strand, within SM_b21420at 1350.413 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.723 kb on - strand, within SM_b21420at 1350.750 kb on + strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.752 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.772 kb on - strand, within SM_b21420at 1351.011 kb on + strand, within SM_b21420at 1351.012 kb on - strand, within SM_b21420at 1351.015 kb on - strand, within SM_b21420at 1351.015 kb on - strand, within SM_b21420at 1351.017 kb on + strand, within SM_b21420at 1351.041 kb on + strand, within SM_b21420at 1351.041 kb on + strand, within SM_b21420at 1351.042 kb on - strand, within SM_b21420at 1351.188 kb on + strand, within SM_b21420at 1351.189 kb on - strand, within SM_b21420at 1351.189 kb on - strand, within SM_b21420at 1351.273 kb on + strand, within SM_b21420at 1351.273 kb on + strand, within SM_b21420at 1351.274 kb on - strand, within SM_b21420at 1351.274 kb on - strand, within SM_b21420at 1351.274 kb on - strand, within SM_b21420at 1351.290 kb on + strand, within SM_b21420at 1351.393 kb on + strand, within SM_b21420at 1351.393 kb on + strand, within SM_b21420at 1351.393 kb on + strand, within SM_b21420at 1351.393 kb on + strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.394 kb on - strand, within SM_b21420at 1351.583 kb on - strandat 1351.583 kb on - strandat 1351.650 kb on + strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.651 kb on - strandat 1351.653 kb on - strandat 1352.203 kb on - strand, within SM_b21421at 1352.233 kb on + strand, within SM_b21421at 1352.234 kb on - strand, within SM_b21421at 1352.591 kb on - strand, within SM_b21421

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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1,349,178 + SM_b21419 0.15 +0.0
1,349,178 + SM_b21419 0.15 +1.2
1,349,260 + SM_b21419 0.24 -0.8
1,349,261 - SM_b21419 0.24 +0.3
1,349,274 - SM_b21419 0.26 -0.7
1,349,279 + SM_b21419 0.26 -0.9
1,349,279 + SM_b21419 0.26 +0.2
1,349,280 - SM_b21419 0.27 +0.1
1,349,280 - SM_b21419 0.27 -0.7
1,349,413 + SM_b21419 0.42 -0.1
1,349,413 + SM_b21419 0.42 -0.8
1,349,443 + SM_b21419 0.45 -2.2
1,349,444 - SM_b21419 0.45 -0.6
1,349,444 - SM_b21419 0.45 +0.9
1,349,444 - SM_b21419 0.45 +0.3
1,349,551 + SM_b21419 0.57 -0.3
1,349,552 - SM_b21419 0.57 -0.8
1,349,552 - SM_b21419 0.57 +0.1
1,349,597 - SM_b21419 0.62 -0.5
1,349,836 + SM_b21419 0.89 -2.0
1,349,903 + -2.2
1,350,010 - SM_b21684 0.25 +0.9
1,350,093 + SM_b21684 0.61 -0.3
1,350,093 + SM_b21684 0.61 -1.0
1,350,093 + SM_b21684 0.61 +3.6
1,350,094 - SM_b21684 0.62 +0.6
1,350,094 - SM_b21684 0.62 -4.1
1,350,094 - SM_b21684 0.62 +0.5
1,350,094 - SM_b21684 0.62 -1.0
1,350,094 - SM_b21684 0.62 -0.4
1,350,094 - SM_b21684 0.62 -2.8
1,350,094 - SM_b21684 0.62 +0.3
1,350,094 - SM_b21684 0.62 +0.5
1,350,094 - SM_b21684 0.62 -1.9
1,350,094 - SM_b21684 0.62 +2.3
1,350,228 + +0.4
1,350,229 - -2.5
1,350,229 - -0.8
1,350,270 + -1.0
1,350,270 + +0.2
1,350,271 - +0.3
1,350,271 - -0.5
1,350,271 - +0.2
1,350,354 + SM_b21420 0.12 +1.8
1,350,354 + SM_b21420 0.12 -1.1
1,350,355 - SM_b21420 0.12 -0.6
1,350,355 - SM_b21420 0.12 -0.6
1,350,392 + SM_b21420 0.15 +0.1
1,350,393 - SM_b21420 0.15 +0.1
1,350,397 + SM_b21420 0.15 -0.0
1,350,397 + SM_b21420 0.15 +0.3
1,350,398 - SM_b21420 0.15 -0.8
1,350,398 - SM_b21420 0.15 +0.0
1,350,398 - SM_b21420 0.15 +0.1
1,350,413 + SM_b21420 0.17 -1.9
1,350,417 + SM_b21420 0.17 -0.7
1,350,417 + SM_b21420 0.17 -0.0
1,350,417 + SM_b21420 0.17 -0.2
1,350,417 + SM_b21420 0.17 -1.2
1,350,417 + SM_b21420 0.17 -1.4
1,350,417 + SM_b21420 0.17 +0.8
1,350,417 + SM_b21420 0.17 -1.1
1,350,417 + SM_b21420 0.17 +0.7
1,350,417 + SM_b21420 0.17 +0.0
1,350,418 - SM_b21420 0.17 -0.4
1,350,418 - SM_b21420 0.17 -0.2
1,350,418 - SM_b21420 0.17 -0.1
1,350,418 - SM_b21420 0.17 +0.1
1,350,418 - SM_b21420 0.17 +0.4
1,350,418 - SM_b21420 0.17 -1.3
1,350,418 - SM_b21420 0.17 -0.9
1,350,723 - SM_b21420 0.38 +1.0
1,350,750 + SM_b21420 0.40 +1.3
1,350,751 - SM_b21420 0.40 -0.4
1,350,751 - SM_b21420 0.40 -0.5
1,350,751 - SM_b21420 0.40 -1.0
1,350,751 - SM_b21420 0.40 -3.6
1,350,751 - SM_b21420 0.40 -1.3
1,350,751 - SM_b21420 0.40 -0.5
1,350,752 + SM_b21420 0.40 -0.3
1,350,771 + SM_b21420 0.42 -0.0
1,350,771 + SM_b21420 0.42 +1.9
1,350,771 + SM_b21420 0.42 +0.2
1,350,772 - SM_b21420 0.42 -0.3
1,351,011 + SM_b21420 0.58 -1.0
1,351,012 - SM_b21420 0.58 -0.3
1,351,015 - SM_b21420 0.59 -0.2
1,351,015 - SM_b21420 0.59 -0.7
1,351,017 + SM_b21420 0.59 +1.2
1,351,041 + SM_b21420 0.61 -0.5
1,351,041 + SM_b21420 0.61 -0.8
1,351,042 - SM_b21420 0.61 -1.5
1,351,188 + SM_b21420 0.71 +0.4
1,351,189 - SM_b21420 0.71 -0.5
1,351,189 - SM_b21420 0.71 -0.3
1,351,273 + SM_b21420 0.77 -0.5
1,351,273 + SM_b21420 0.77 +1.6
1,351,274 - SM_b21420 0.77 +0.2
1,351,274 - SM_b21420 0.77 +0.6
1,351,274 - SM_b21420 0.77 -2.2
1,351,290 + SM_b21420 0.78 +0.2
1,351,393 + SM_b21420 0.85 -0.8
1,351,393 + SM_b21420 0.85 -0.8
1,351,393 + SM_b21420 0.85 -0.9
1,351,393 + SM_b21420 0.85 -0.4
1,351,394 - SM_b21420 0.85 -0.4
1,351,394 - SM_b21420 0.85 -0.5
1,351,394 - SM_b21420 0.85 -0.1
1,351,394 - SM_b21420 0.85 -1.8
1,351,394 - SM_b21420 0.85 -0.5
1,351,583 - -0.2
1,351,583 - -1.2
1,351,650 + -0.1
1,351,651 - +0.1
1,351,651 - -3.5
1,351,651 - +0.1
1,351,651 - +0.4
1,351,651 - -0.8
1,351,651 - -0.7
1,351,651 - -0.3
1,351,651 - +0.9
1,351,651 - +0.6
1,351,653 - -0.6
1,352,203 - SM_b21421 0.49 -1.1
1,352,233 + SM_b21421 0.52 +0.7
1,352,234 - SM_b21421 0.52 -2.1
1,352,591 - SM_b21421 0.86 +0.2

Or see this region's nucleotide sequence