Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21321 and SM_b21322 are separated by 42 nucleotides SM_b21322 and SM_b21323 overlap by 14 nucleotides
SM_b21321: SM_b21321 - hypothetical protein, at 990,235 to 991,413
_b21321
SM_b21322: SM_b21322 - hypothetical protein, at 991,456 to 992,628
_b21322
SM_b21323: SM_b21323 - hypothetical protein, at 992,615 to 993,787
_b21323
Position (kb) 991
992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 990.465 kb on + strand at 990.466 kb on - strand, within SM_b21321 at 990.466 kb on - strand, within SM_b21321 at 990.706 kb on + strand, within SM_b21321 at 990.763 kb on + strand, within SM_b21321 at 991.012 kb on + strand, within SM_b21321 at 991.013 kb on - strand, within SM_b21321 at 991.051 kb on + strand, within SM_b21321 at 991.411 kb on + strand at 991.439 kb on - strand at 991.451 kb on - strand at 991.451 kb on - strand at 991.451 kb on - strand at 991.461 kb on + strand at 991.461 kb on + strand at 991.462 kb on - strand at 991.462 kb on - strand at 991.487 kb on - strand at 991.563 kb on + strand at 991.609 kb on + strand, within SM_b21322 at 991.610 kb on - strand, within SM_b21322 at 991.660 kb on + strand, within SM_b21322 at 991.661 kb on - strand, within SM_b21322 at 991.708 kb on + strand, within SM_b21322 at 991.709 kb on - strand, within SM_b21322 at 991.709 kb on - strand, within SM_b21322 at 991.709 kb on - strand, within SM_b21322 at 991.909 kb on - strand, within SM_b21322 at 992.098 kb on + strand, within SM_b21322 at 992.098 kb on + strand, within SM_b21322 at 992.167 kb on + strand, within SM_b21322 at 992.186 kb on + strand, within SM_b21322 at 992.187 kb on - strand, within SM_b21322 at 992.194 kb on + strand, within SM_b21322 at 992.234 kb on - strand, within SM_b21322 at 992.272 kb on + strand, within SM_b21322 at 992.273 kb on - strand, within SM_b21322 at 992.480 kb on - strand, within SM_b21322 at 992.524 kb on + strand at 992.524 kb on + strand at 992.887 kb on + strand, within SM_b21323 at 992.888 kb on - strand, within SM_b21323 at 992.888 kb on - strand, within SM_b21323 at 992.888 kb on - strand, within SM_b21323 at 992.889 kb on + strand, within SM_b21323 at 992.890 kb on - strand, within SM_b21323 at 992.890 kb on - strand, within SM_b21323 at 992.963 kb on + strand, within SM_b21323 at 992.963 kb on + strand, within SM_b21323 at 992.964 kb on - strand, within SM_b21323 at 992.964 kb on - strand, within SM_b21323 at 992.976 kb on + strand, within SM_b21323 at 992.977 kb on - strand, within SM_b21323 at 992.977 kb on - strand, within SM_b21323 at 993.015 kb on - strand, within SM_b21323 at 993.015 kb on - strand, within SM_b21323 at 993.131 kb on + strand, within SM_b21323 at 993.131 kb on + strand, within SM_b21323 at 993.131 kb on + strand, within SM_b21323 at 993.131 kb on + strand, within SM_b21323 at 993.131 kb on + strand, within SM_b21323 at 993.132 kb on - strand, within SM_b21323 at 993.132 kb on - strand, within SM_b21323 at 993.132 kb on - strand, within SM_b21323 at 993.132 kb on - strand, within SM_b21323 at 993.132 kb on - strand, within SM_b21323 at 993.141 kb on - strand, within SM_b21323 at 993.161 kb on + strand, within SM_b21323 at 993.161 kb on + strand, within SM_b21323 at 993.162 kb on - strand, within SM_b21323 at 993.166 kb on + strand, within SM_b21323 at 993.167 kb on - strand, within SM_b21323 at 993.242 kb on + strand, within SM_b21323 at 993.242 kb on + strand, within SM_b21323 at 993.243 kb on - strand, within SM_b21323 at 993.243 kb on - strand, within SM_b21323 at 993.434 kb on + strand, within SM_b21323
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 990,465 + +1.5 990,466 - SM_b21321 0.20 -1.7 990,466 - SM_b21321 0.20 +1.7 990,706 + SM_b21321 0.40 +0.3 990,763 + SM_b21321 0.45 +0.2 991,012 + SM_b21321 0.66 -1.1 991,013 - SM_b21321 0.66 +0.2 991,051 + SM_b21321 0.69 +0.8 991,411 + +0.8 991,439 - +1.8 991,451 - -0.2 991,451 - +0.5 991,451 - -1.0 991,461 + -0.2 991,461 + -0.2 991,462 - +0.2 991,462 - -0.6 991,487 - -1.0 991,563 + +0.5 991,609 + SM_b21322 0.13 +0.9 991,610 - SM_b21322 0.13 -1.3 991,660 + SM_b21322 0.17 -1.8 991,661 - SM_b21322 0.17 -1.0 991,708 + SM_b21322 0.21 -1.3 991,709 - SM_b21322 0.22 -0.9 991,709 - SM_b21322 0.22 -0.3 991,709 - SM_b21322 0.22 -0.9 991,909 - SM_b21322 0.39 +0.1 992,098 + SM_b21322 0.55 -0.0 992,098 + SM_b21322 0.55 -1.3 992,167 + SM_b21322 0.61 -1.3 992,186 + SM_b21322 0.62 +0.1 992,187 - SM_b21322 0.62 +0.3 992,194 + SM_b21322 0.63 +3.1 992,234 - SM_b21322 0.66 +0.6 992,272 + SM_b21322 0.70 -0.8 992,273 - SM_b21322 0.70 -1.4 992,480 - SM_b21322 0.87 -0.3 992,524 + +0.0 992,524 + -1.8 992,887 + SM_b21323 0.23 +0.8 992,888 - SM_b21323 0.23 -0.3 992,888 - SM_b21323 0.23 +0.9 992,888 - SM_b21323 0.23 -0.1 992,889 + SM_b21323 0.23 -0.4 992,890 - SM_b21323 0.23 +0.2 992,890 - SM_b21323 0.23 -0.2 992,963 + SM_b21323 0.30 +0.1 992,963 + SM_b21323 0.30 -0.0 992,964 - SM_b21323 0.30 -0.3 992,964 - SM_b21323 0.30 -0.4 992,976 + SM_b21323 0.31 -1.7 992,977 - SM_b21323 0.31 -2.3 992,977 - SM_b21323 0.31 -3.6 993,015 - SM_b21323 0.34 -0.5 993,015 - SM_b21323 0.34 -3.4 993,131 + SM_b21323 0.44 +0.2 993,131 + SM_b21323 0.44 -0.9 993,131 + SM_b21323 0.44 -1.0 993,131 + SM_b21323 0.44 -0.8 993,131 + SM_b21323 0.44 +0.1 993,132 - SM_b21323 0.44 -0.2 993,132 - SM_b21323 0.44 +0.4 993,132 - SM_b21323 0.44 -0.3 993,132 - SM_b21323 0.44 +0.9 993,132 - SM_b21323 0.44 -1.3 993,141 - SM_b21323 0.45 -0.4 993,161 + SM_b21323 0.47 +0.9 993,161 + SM_b21323 0.47 -0.4 993,162 - SM_b21323 0.47 -3.4 993,166 + SM_b21323 0.47 -0.3 993,167 - SM_b21323 0.47 -0.8 993,242 + SM_b21323 0.53 -0.7 993,242 + SM_b21323 0.53 -0.3 993,243 - SM_b21323 0.54 -1.9 993,243 - SM_b21323 0.54 -0.4 993,434 + SM_b21323 0.70 +0.5
Or see this region's nucleotide sequence