Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21209

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21207 and SM_b21208 overlap by 4 nucleotidesSM_b21208 and SM_b21209 are separated by 95 nucleotidesSM_b21209 and SM_b21210 overlap by 4 nucleotidesSM_b21210 and SM_b21211 are separated by 208 nucleotides SM_b21207: SM_b21207 - hypothetical protein, at 959,968 to 960,972 _b21207 SM_b21208: SM_b21208 - TetR family transcriptional regulator, at 960,969 to 961,691 _b21208 SM_b21209: SM_b21209 - two-component sensor histidine kinase, at 961,787 to 963,139 _b21209 SM_b21210: SM_b21210 - two-component response regulator protein, at 963,136 to 963,807 _b21210 SM_b21211: SM_b21211 - hypothetical protein, at 964,016 to 965,782 _b21211 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 961.078 kb on + strand, within SM_b21208at 961.079 kb on - strand, within SM_b21208at 961.223 kb on + strand, within SM_b21208at 961.223 kb on + strand, within SM_b21208at 961.224 kb on - strand, within SM_b21208at 961.228 kb on + strand, within SM_b21208at 961.228 kb on + strand, within SM_b21208at 961.229 kb on - strand, within SM_b21208at 961.477 kb on + strand, within SM_b21208at 961.477 kb on + strand, within SM_b21208at 961.477 kb on + strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.478 kb on - strand, within SM_b21208at 961.681 kb on + strandat 961.811 kb on - strandat 961.927 kb on - strand, within SM_b21209at 962.018 kb on + strand, within SM_b21209at 962.019 kb on - strand, within SM_b21209at 962.019 kb on - strand, within SM_b21209at 962.019 kb on - strand, within SM_b21209at 962.038 kb on + strand, within SM_b21209at 962.038 kb on + strand, within SM_b21209at 962.124 kb on - strand, within SM_b21209at 962.269 kb on + strand, within SM_b21209at 962.650 kb on - strand, within SM_b21209at 962.654 kb on - strand, within SM_b21209at 962.655 kb on + strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.656 kb on - strand, within SM_b21209at 962.877 kb on + strand, within SM_b21209at 962.877 kb on + strand, within SM_b21209at 962.878 kb on - strand, within SM_b21209at 962.878 kb on - strand, within SM_b21209at 962.908 kb on - strand, within SM_b21209at 963.033 kb on + strandat 963.034 kb on - strandat 963.034 kb on - strandat 963.384 kb on + strand, within SM_b21210at 963.384 kb on + strand, within SM_b21210at 963.407 kb on + strand, within SM_b21210at 963.408 kb on - strand, within SM_b21210at 963.439 kb on + strand, within SM_b21210at 963.440 kb on - strand, within SM_b21210at 963.441 kb on + strand, within SM_b21210at 963.441 kb on + strand, within SM_b21210at 963.442 kb on - strand, within SM_b21210at 963.484 kb on - strand, within SM_b21210at 963.547 kb on - strand, within SM_b21210at 963.852 kb on + strandat 963.853 kb on - strandat 963.912 kb on + strandat 964.090 kb on + strandat 964.090 kb on + strandat 964.091 kb on - strandat 964.091 kb on - strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.092 kb on + strandat 964.093 kb on - strandat 964.093 kb on - strandat 964.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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961,078 + SM_b21208 0.15 +0.2
961,079 - SM_b21208 0.15 -2.2
961,223 + SM_b21208 0.35 +0.8
961,223 + SM_b21208 0.35 +0.5
961,224 - SM_b21208 0.35 -0.2
961,228 + SM_b21208 0.36 -0.7
961,228 + SM_b21208 0.36 +0.5
961,229 - SM_b21208 0.36 -0.6
961,477 + SM_b21208 0.70 +2.0
961,477 + SM_b21208 0.70 +0.2
961,477 + SM_b21208 0.70 +1.6
961,478 - SM_b21208 0.70 -0.5
961,478 - SM_b21208 0.70 -0.0
961,478 - SM_b21208 0.70 +0.4
961,478 - SM_b21208 0.70 +0.0
961,478 - SM_b21208 0.70 +0.2
961,681 + +0.9
961,811 - +0.8
961,927 - SM_b21209 0.10 -1.5
962,018 + SM_b21209 0.17 +0.0
962,019 - SM_b21209 0.17 -1.0
962,019 - SM_b21209 0.17 +0.1
962,019 - SM_b21209 0.17 +0.1
962,038 + SM_b21209 0.19 -0.5
962,038 + SM_b21209 0.19 -0.4
962,124 - SM_b21209 0.25 +0.6
962,269 + SM_b21209 0.36 -0.4
962,650 - SM_b21209 0.64 -0.9
962,654 - SM_b21209 0.64 -0.3
962,655 + SM_b21209 0.64 +0.2
962,656 - SM_b21209 0.64 -1.3
962,656 - SM_b21209 0.64 -0.3
962,656 - SM_b21209 0.64 -0.0
962,656 - SM_b21209 0.64 +1.5
962,656 - SM_b21209 0.64 -0.4
962,656 - SM_b21209 0.64 -1.3
962,877 + SM_b21209 0.81 -0.5
962,877 + SM_b21209 0.81 -0.1
962,878 - SM_b21209 0.81 -1.2
962,878 - SM_b21209 0.81 +0.3
962,908 - SM_b21209 0.83 -1.0
963,033 + +0.4
963,034 - -0.9
963,034 - +0.5
963,384 + SM_b21210 0.37 -0.9
963,384 + SM_b21210 0.37 -0.2
963,407 + SM_b21210 0.40 +1.4
963,408 - SM_b21210 0.40 -0.3
963,439 + SM_b21210 0.45 +0.2
963,440 - SM_b21210 0.45 +1.4
963,441 + SM_b21210 0.45 +0.3
963,441 + SM_b21210 0.45 -2.0
963,442 - SM_b21210 0.46 -2.7
963,484 - SM_b21210 0.52 -0.4
963,547 - SM_b21210 0.61 +0.0
963,852 + -2.4
963,853 - -0.5
963,912 + -0.3
964,090 + +1.0
964,090 + +1.4
964,091 - -0.7
964,091 - +0.4
964,092 + +0.3
964,092 + +2.6
964,092 + +1.7
964,092 + -0.4
964,092 + +0.2
964,092 + -0.1
964,093 - +0.1
964,093 - +0.9
964,093 - -0.0

Or see this region's nucleotide sequence