Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21042 and SM_b21043 are separated by 609 nucleotides SM_b21043 and SM_b21044 are separated by 175 nucleotides
SM_b21042: SM_b21042 - peptidase T, at 661,226 to 662,467
_b21042
SM_b21043: SM_b21043 - hypothetical protein, at 663,077 to 663,646
_b21043
SM_b21044: SM_b21044 - ATP-dependent DNA ligase, at 663,822 to 665,732
_b21044
Position (kb) 663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 662.198 kb on + strand, within SM_b21042 at 662.199 kb on - strand, within SM_b21042 at 662.340 kb on + strand, within SM_b21042 at 662.369 kb on + strand at 662.370 kb on - strand at 662.370 kb on - strand at 662.605 kb on - strand at 662.652 kb on + strand at 662.693 kb on + strand at 662.693 kb on + strand at 662.694 kb on - strand at 662.699 kb on - strand at 662.699 kb on - strand at 662.699 kb on - strand at 662.744 kb on + strand at 662.782 kb on - strand at 662.801 kb on + strand at 662.802 kb on - strand at 662.802 kb on - strand at 662.935 kb on - strand at 662.936 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.940 kb on + strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.941 kb on - strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.946 kb on + strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 662.947 kb on - strand at 663.026 kb on + strand at 663.027 kb on - strand at 663.034 kb on - strand at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.229 kb on + strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.230 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.232 kb on - strand, within SM_b21043 at 663.387 kb on + strand, within SM_b21043 at 663.391 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043 at 663.450 kb on + strand, within SM_b21043 at 663.644 kb on + strand at 663.676 kb on + strand at 663.755 kb on + strand at 663.755 kb on + strand at 663.755 kb on + strand at 663.767 kb on + strand at 663.823 kb on + strand at 663.823 kb on + strand at 663.824 kb on - strand at 663.824 kb on - strand at 663.873 kb on - strand at 663.959 kb on - strand at 663.998 kb on - strand at 664.048 kb on + strand at 664.049 kb on - strand, within SM_b21044 at 664.305 kb on + strand, within SM_b21044 at 664.306 kb on - strand, within SM_b21044 at 664.306 kb on - strand, within SM_b21044 at 664.468 kb on + strand, within SM_b21044 at 664.468 kb on + strand, within SM_b21044 at 664.495 kb on - strand, within SM_b21044 at 664.608 kb on + strand, within SM_b21044 at 664.609 kb on - strand, within SM_b21044
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 662,198 + SM_b21042 0.78 +0.7 662,199 - SM_b21042 0.78 +0.1 662,340 + SM_b21042 0.90 -0.5 662,369 + -2.1 662,370 - +1.2 662,370 - +0.6 662,605 - +0.3 662,652 + -0.1 662,693 + -0.3 662,693 + +0.5 662,694 - +0.8 662,699 - -1.4 662,699 - -0.8 662,699 - -0.1 662,744 + -0.3 662,782 - -0.1 662,801 + -0.3 662,802 - -1.0 662,802 - +0.2 662,935 - -0.1 662,936 + -0.5 662,940 + -0.7 662,940 + +0.0 662,940 + -1.8 662,940 + -0.3 662,941 - -1.3 662,941 - +0.3 662,941 - +0.9 662,946 + -1.1 662,946 + +1.2 662,946 + +0.4 662,946 + -0.0 662,947 - -0.2 662,947 - -1.0 662,947 - -0.2 662,947 - -0.3 663,026 + -1.6 663,027 - -0.8 663,034 - +0.1 663,229 + SM_b21043 0.27 -0.6 663,229 + SM_b21043 0.27 -1.0 663,229 + SM_b21043 0.27 -0.7 663,229 + SM_b21043 0.27 -0.2 663,230 - SM_b21043 0.27 -2.2 663,230 - SM_b21043 0.27 +1.5 663,230 - SM_b21043 0.27 +0.2 663,230 - SM_b21043 0.27 +1.5 663,230 - SM_b21043 0.27 -2.9 663,230 - SM_b21043 0.27 -1.5 663,232 - SM_b21043 0.27 +1.7 663,232 - SM_b21043 0.27 +0.0 663,387 + SM_b21043 0.54 -0.9 663,391 + SM_b21043 0.55 -0.9 663,450 + SM_b21043 0.65 -0.6 663,450 + SM_b21043 0.65 -0.1 663,644 + +4.1 663,676 + -0.0 663,755 + -1.7 663,755 + -0.1 663,755 + -0.7 663,767 + +1.1 663,823 + +0.6 663,823 + +0.1 663,824 - +0.0 663,824 - -1.7 663,873 - -0.8 663,959 - +1.6 663,998 - +0.2 664,048 + -2.0 664,049 - SM_b21044 0.12 +0.9 664,305 + SM_b21044 0.25 +0.9 664,306 - SM_b21044 0.25 +0.1 664,306 - SM_b21044 0.25 -0.2 664,468 + SM_b21044 0.34 +1.1 664,468 + SM_b21044 0.34 +1.4 664,495 - SM_b21044 0.35 -0.6 664,608 + SM_b21044 0.41 -1.6 664,609 - SM_b21044 0.41 -1.8
Or see this region's nucleotide sequence