Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21019

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21018 and SM_b21019 overlap by 8 nucleotidesSM_b21019 and SM_b21021 are separated by 225 nucleotides SM_b21018: SM_b21018 - sugar ABC transporter permease, at 641,408 to 642,439 _b21018 SM_b21019: SM_b21019 - sugar ABC transporter ATP-binding protein, at 642,432 to 643,949 _b21019 SM_b21021: SM_b21021 - transcriptional regulator, at 644,175 to 645,122 _b21021 Position (kb) 642 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 641.580 kb on + strand, within SM_b21018at 641.626 kb on + strand, within SM_b21018at 641.690 kb on + strand, within SM_b21018at 641.690 kb on + strand, within SM_b21018at 641.690 kb on + strand, within SM_b21018at 641.691 kb on - strand, within SM_b21018at 641.691 kb on - strand, within SM_b21018at 641.831 kb on - strand, within SM_b21018at 641.837 kb on + strand, within SM_b21018at 641.880 kb on + strand, within SM_b21018at 642.106 kb on - strand, within SM_b21018at 642.106 kb on - strand, within SM_b21018at 642.254 kb on - strand, within SM_b21018at 642.277 kb on + strand, within SM_b21018at 642.277 kb on + strand, within SM_b21018at 642.278 kb on - strand, within SM_b21018at 642.348 kb on + strandat 642.349 kb on - strandat 642.349 kb on - strandat 642.396 kb on - strandat 642.396 kb on - strandat 642.628 kb on + strand, within SM_b21019at 642.815 kb on + strand, within SM_b21019at 642.816 kb on - strand, within SM_b21019at 642.816 kb on - strand, within SM_b21019at 642.931 kb on + strand, within SM_b21019at 642.954 kb on + strand, within SM_b21019at 642.955 kb on - strand, within SM_b21019at 643.112 kb on + strand, within SM_b21019at 643.255 kb on + strand, within SM_b21019at 643.255 kb on + strand, within SM_b21019at 643.255 kb on + strand, within SM_b21019at 643.256 kb on - strand, within SM_b21019at 643.299 kb on + strand, within SM_b21019at 643.446 kb on + strand, within SM_b21019at 643.446 kb on + strand, within SM_b21019at 643.447 kb on - strand, within SM_b21019at 643.468 kb on - strand, within SM_b21019at 643.468 kb on - strand, within SM_b21019at 643.672 kb on + strand, within SM_b21019at 643.748 kb on + strand, within SM_b21019at 643.877 kb on - strandat 644.024 kb on - strandat 644.055 kb on + strandat 644.244 kb on + strandat 644.245 kb on - strandat 644.245 kb on - strandat 644.247 kb on + strandat 644.247 kb on + strandat 644.248 kb on - strandat 644.248 kb on - strandat 644.248 kb on - strandat 644.250 kb on + strandat 644.250 kb on + strandat 644.348 kb on + strand, within SM_b21021at 644.360 kb on + strand, within SM_b21021at 644.360 kb on + strandat 644.373 kb on + strand, within SM_b21021at 644.374 kb on - strand, within SM_b21021at 644.416 kb on - strand, within SM_b21021at 644.433 kb on + strand, within SM_b21021at 644.433 kb on + strand, within SM_b21021at 644.601 kb on - strand, within SM_b21021at 644.601 kb on - strand, within SM_b21021at 644.609 kb on - strand, within SM_b21021at 644.637 kb on + strand, within SM_b21021at 644.637 kb on + strand, within SM_b21021at 644.638 kb on - strand, within SM_b21021at 644.638 kb on - strand, within SM_b21021at 644.638 kb on - strand, within SM_b21021at 644.638 kb on - strand, within SM_b21021at 644.784 kb on + strand, within SM_b21021at 644.785 kb on - strand, within SM_b21021at 644.842 kb on - strand, within SM_b21021

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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641,580 + SM_b21018 0.17 -2.8
641,626 + SM_b21018 0.21 -1.9
641,690 + SM_b21018 0.27 +2.3
641,690 + SM_b21018 0.27 -0.2
641,690 + SM_b21018 0.27 -1.3
641,691 - SM_b21018 0.27 -1.5
641,691 - SM_b21018 0.27 -1.0
641,831 - SM_b21018 0.41 +0.5
641,837 + SM_b21018 0.42 +0.3
641,880 + SM_b21018 0.46 -0.6
642,106 - SM_b21018 0.68 -0.7
642,106 - SM_b21018 0.68 -0.1
642,254 - SM_b21018 0.82 -0.8
642,277 + SM_b21018 0.84 -0.4
642,277 + SM_b21018 0.84 +0.2
642,278 - SM_b21018 0.84 -0.0
642,348 + +0.3
642,349 - +0.8
642,349 - -1.8
642,396 - +0.5
642,396 - -1.4
642,628 + SM_b21019 0.13 +2.1
642,815 + SM_b21019 0.25 -0.1
642,816 - SM_b21019 0.25 -0.4
642,816 - SM_b21019 0.25 -2.1
642,931 + SM_b21019 0.33 +0.3
642,954 + SM_b21019 0.34 +0.8
642,955 - SM_b21019 0.34 -1.0
643,112 + SM_b21019 0.45 -0.4
643,255 + SM_b21019 0.54 -0.8
643,255 + SM_b21019 0.54 -0.3
643,255 + SM_b21019 0.54 +1.4
643,256 - SM_b21019 0.54 +0.2
643,299 + SM_b21019 0.57 -0.1
643,446 + SM_b21019 0.67 +0.1
643,446 + SM_b21019 0.67 -0.1
643,447 - SM_b21019 0.67 -0.8
643,468 - SM_b21019 0.68 +0.5
643,468 - SM_b21019 0.68 -2.5
643,672 + SM_b21019 0.82 -0.2
643,748 + SM_b21019 0.87 +1.1
643,877 - +0.4
644,024 - -0.8
644,055 + -0.2
644,244 + +2.1
644,245 - +0.2
644,245 - -0.1
644,247 + -0.5
644,247 + -0.4
644,248 - -0.3
644,248 - -0.2
644,248 - +0.5
644,250 + +0.8
644,250 + -1.8
644,348 + SM_b21021 0.18 -0.0
644,360 + SM_b21021 0.20 -0.9
644,360 + +1.5
644,373 + SM_b21021 0.21 -0.6
644,374 - SM_b21021 0.21 -1.5
644,416 - SM_b21021 0.25 -0.3
644,433 + SM_b21021 0.27 -3.0
644,433 + SM_b21021 0.27 -1.6
644,601 - SM_b21021 0.45 +0.0
644,601 - SM_b21021 0.45 -0.2
644,609 - SM_b21021 0.46 -1.0
644,637 + SM_b21021 0.49 -2.6
644,637 + SM_b21021 0.49 +0.8
644,638 - SM_b21021 0.49 +0.1
644,638 - SM_b21021 0.49 -0.1
644,638 - SM_b21021 0.49 +0.2
644,638 - SM_b21021 0.49 +0.2
644,784 + SM_b21021 0.64 +0.5
644,785 - SM_b21021 0.64 -0.7
644,842 - SM_b21021 0.70 +0.0

Or see this region's nucleotide sequence