Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20955

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20954 and SM_b20955 are separated by 5 nucleotidesSM_b20955 and SM_b20956 are separated by 95 nucleotides SM_b20954: SM_b20954 - succinyltransferase, at 1,181,238 to 1,182,350 _b20954 SM_b20955: SM_b20955 - endo-beta-1,3-1,4-glycanase, at 1,182,356 to 1,183,165 _b20955 SM_b20956: SM_b20956 - glucosyltransferase, at 1,183,261 to 1,184,472 _b20956 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1181.520 kb on - strand, within SM_b20954at 1181.670 kb on + strand, within SM_b20954at 1181.696 kb on + strand, within SM_b20954at 1181.943 kb on + strand, within SM_b20954at 1181.944 kb on - strand, within SM_b20954at 1181.946 kb on + strand, within SM_b20954at 1181.946 kb on + strand, within SM_b20954at 1181.947 kb on - strand, within SM_b20954at 1182.163 kb on - strand, within SM_b20954at 1182.163 kb on - strand, within SM_b20954at 1182.267 kb on - strandat 1182.348 kb on + strandat 1182.349 kb on - strandat 1182.372 kb on - strandat 1182.734 kb on + strand, within SM_b20955at 1182.735 kb on - strandat 1182.821 kb on + strand, within SM_b20955at 1182.821 kb on + strand, within SM_b20955at 1182.821 kb on + strand, within SM_b20955at 1182.893 kb on + strand, within SM_b20955at 1182.930 kb on - strand, within SM_b20955at 1183.053 kb on - strand, within SM_b20955at 1183.221 kb on + strandat 1183.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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1,181,520 - SM_b20954 0.25 -0.7
1,181,670 + SM_b20954 0.39 +0.4
1,181,696 + SM_b20954 0.41 +0.1
1,181,943 + SM_b20954 0.63 +0.1
1,181,944 - SM_b20954 0.63 -0.1
1,181,946 + SM_b20954 0.64 -0.2
1,181,946 + SM_b20954 0.64 -1.1
1,181,947 - SM_b20954 0.64 -0.6
1,182,163 - SM_b20954 0.83 -0.1
1,182,163 - SM_b20954 0.83 -0.7
1,182,267 - -0.8
1,182,348 + -0.6
1,182,349 - +1.6
1,182,372 - -1.2
1,182,734 + SM_b20955 0.47 -3.5
1,182,735 - +2.5
1,182,821 + SM_b20955 0.57 -1.2
1,182,821 + SM_b20955 0.57 -1.3
1,182,821 + SM_b20955 0.57 -2.1
1,182,893 + SM_b20955 0.66 -0.8
1,182,930 - SM_b20955 0.71 -2.1
1,183,053 - SM_b20955 0.86 -2.3
1,183,221 + -1.8
1,183,221 + +1.6

Or see this region's nucleotide sequence