Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20922

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20919 and SM_b20920 overlap by 51 nucleotidesSM_b20920 and SM_b20921 are separated by 54 nucleotidesSM_b20921 and SM_b20922 overlap by 116 nucleotidesSM_b20922 and SM_b21395 are separated by 26 nucleotidesSM_b21395 and SM_b21396 are separated by 55 nucleotides SM_b20919: SM_b20919 - transposase of insertion sequence ISRm1 orfB protein, at 1,326,279 to 1,327,109 _b20919 SM_b20920: SM_b20920 - hypothetical protein, at 1,327,059 to 1,327,481 _b20920 SM_b20921: SM_b20921 - hypothetical protein, at 1,327,536 to 1,327,778 _b20921 SM_b20922: SM_b20922 - hypothetical protein, at 1,327,663 to 1,328,715 _b20922 SM_b21395: SM_b21395 - hypothetical protein, at 1,328,742 to 1,329,278 _b21395 SM_b21396: SM_b21396 - hypothetical protein, at 1,329,334 to 1,329,780 _b21396 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -2 -1 0 1 2at 1327.187 kb on + strand, within SM_b20920at 1327.191 kb on + strand, within SM_b20920at 1327.192 kb on - strand, within SM_b20920at 1327.192 kb on - strand, within SM_b20920at 1327.192 kb on - strand, within SM_b20920at 1327.440 kb on - strandat 1327.448 kb on + strandat 1327.449 kb on - strandat 1327.449 kb on - strandat 1327.451 kb on - strandat 1327.522 kb on + strandat 1327.522 kb on + strandat 1327.537 kb on + strandat 1327.618 kb on - strand, within SM_b20921at 1327.618 kb on - strand, within SM_b20921at 1327.900 kb on + strand, within SM_b20922at 1327.901 kb on - strand, within SM_b20922at 1327.901 kb on - strand, within SM_b20922at 1328.016 kb on + strand, within SM_b20922at 1328.016 kb on + strand, within SM_b20922at 1328.017 kb on - strand, within SM_b20922at 1328.211 kb on + strand, within SM_b20922at 1328.212 kb on - strand, within SM_b20922at 1328.438 kb on + strand, within SM_b20922at 1328.438 kb on + strand, within SM_b20922at 1328.439 kb on - strand, within SM_b20922at 1328.439 kb on - strand, within SM_b20922at 1328.549 kb on + strand, within SM_b20922at 1328.597 kb on + strand, within SM_b20922at 1328.597 kb on + strand, within SM_b20922at 1328.597 kb on + strand, within SM_b20922at 1328.648 kb on + strandat 1328.774 kb on - strandat 1328.774 kb on - strandat 1328.774 kb on - strandat 1328.946 kb on - strand, within SM_b21395at 1329.065 kb on + strand, within SM_b21395at 1329.289 kb on + strandat 1329.371 kb on + strandat 1329.371 kb on + strandat 1329.371 kb on + strandat 1329.371 kb on + strandat 1329.372 kb on - strandat 1329.524 kb on + strand, within SM_b21396at 1329.524 kb on + strand, within SM_b21396at 1329.525 kb on - strand, within SM_b21396at 1329.543 kb on + strand, within SM_b21396at 1329.544 kb on - strand, within SM_b21396at 1329.544 kb on - strand, within SM_b21396at 1329.544 kb on - strand, within SM_b21396at 1329.631 kb on + strand, within SM_b21396at 1329.632 kb on - strand, within SM_b21396at 1329.632 kb on - strand, within SM_b21396at 1329.703 kb on + strand, within SM_b21396

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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1,327,187 + SM_b20920 0.30 +1.6
1,327,191 + SM_b20920 0.31 +0.2
1,327,192 - SM_b20920 0.31 +0.2
1,327,192 - SM_b20920 0.31 -2.1
1,327,192 - SM_b20920 0.31 +1.4
1,327,440 - -0.5
1,327,448 + +0.6
1,327,449 - +0.2
1,327,449 - +0.1
1,327,451 - -0.9
1,327,522 + +2.0
1,327,522 + -0.6
1,327,537 + +0.1
1,327,618 - SM_b20921 0.34 +0.7
1,327,618 - SM_b20921 0.34 -0.0
1,327,900 + SM_b20922 0.23 -1.3
1,327,901 - SM_b20922 0.23 +0.0
1,327,901 - SM_b20922 0.23 -0.5
1,328,016 + SM_b20922 0.34 +0.1
1,328,016 + SM_b20922 0.34 -0.7
1,328,017 - SM_b20922 0.34 +0.5
1,328,211 + SM_b20922 0.52 -0.4
1,328,212 - SM_b20922 0.52 -0.8
1,328,438 + SM_b20922 0.74 -0.7
1,328,438 + SM_b20922 0.74 -0.9
1,328,439 - SM_b20922 0.74 -1.1
1,328,439 - SM_b20922 0.74 -1.9
1,328,549 + SM_b20922 0.84 -1.3
1,328,597 + SM_b20922 0.89 +0.9
1,328,597 + SM_b20922 0.89 -0.9
1,328,597 + SM_b20922 0.89 -1.2
1,328,648 + -0.8
1,328,774 - +1.2
1,328,774 - +0.6
1,328,774 - -0.2
1,328,946 - SM_b21395 0.38 -0.4
1,329,065 + SM_b21395 0.60 -0.4
1,329,289 + -0.6
1,329,371 + +1.7
1,329,371 + -1.4
1,329,371 + -0.1
1,329,371 + +0.6
1,329,372 - -1.1
1,329,524 + SM_b21396 0.43 -0.3
1,329,524 + SM_b21396 0.43 -0.7
1,329,525 - SM_b21396 0.43 +0.7
1,329,543 + SM_b21396 0.47 +0.2
1,329,544 - SM_b21396 0.47 +0.4
1,329,544 - SM_b21396 0.47 -0.4
1,329,544 - SM_b21396 0.47 -0.8
1,329,631 + SM_b21396 0.66 -0.1
1,329,632 - SM_b21396 0.67 +0.4
1,329,632 - SM_b21396 0.67 +0.7
1,329,703 + SM_b21396 0.83 +0.6

Or see this region's nucleotide sequence