Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20838 and SM_b20839 are separated by 662 nucleotides SM_b20839 and SM_b20840 are separated by 26 nucleotides SM_b20840 and SM_b20841 overlap by 19 nucleotides
SM_b20838: SM_b20838 - secreted calcium-binding protein, at 629,245 to 630,306
_b20838
SM_b20839: SM_b20839 - hypothetical protein, at 630,969 to 631,178
_b20839
SM_b20840: SM_b20840 - hypothetical protein, at 631,205 to 631,897
_b20840
SM_b20841: SM_b20841 - hypothetical protein, at 631,879 to 633,090
_b20841
Position (kb) 631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 630.210 kb on - strand at 630.226 kb on - strand at 630.267 kb on - strand at 630.514 kb on + strand at 630.515 kb on - strand at 630.515 kb on - strand at 630.515 kb on - strand at 630.516 kb on + strand at 630.516 kb on + strand at 630.516 kb on + strand at 630.587 kb on + strand at 630.588 kb on - strand at 630.588 kb on - strand at 630.717 kb on + strand at 630.717 kb on + strand at 630.717 kb on + strand at 630.778 kb on + strand at 630.779 kb on - strand at 630.944 kb on - strand at 631.207 kb on - strand at 631.248 kb on + strand at 631.248 kb on + strand at 631.249 kb on - strand at 631.257 kb on - strand at 631.257 kb on - strand at 631.258 kb on + strand at 631.258 kb on + strand at 631.258 kb on + strand at 631.258 kb on + strand at 631.258 kb on + strand at 631.259 kb on - strand at 631.259 kb on - strand at 631.261 kb on + strand at 631.262 kb on - strand at 631.358 kb on + strand, within SM_b20840 at 631.358 kb on + strand, within SM_b20840 at 631.358 kb on + strand, within SM_b20840 at 631.360 kb on + strand, within SM_b20840 at 631.360 kb on + strand, within SM_b20840 at 631.360 kb on + strand, within SM_b20840 at 631.360 kb on + strand, within SM_b20840 at 631.362 kb on + strand, within SM_b20840 at 631.362 kb on + strand, within SM_b20840 at 631.362 kb on + strand, within SM_b20840 at 631.362 kb on + strand, within SM_b20840 at 631.362 kb on + strand, within SM_b20840 at 631.419 kb on + strand, within SM_b20840 at 631.421 kb on + strand, within SM_b20840 at 631.422 kb on - strand, within SM_b20840 at 631.422 kb on - strand, within SM_b20840 at 631.541 kb on - strand, within SM_b20840 at 631.541 kb on - strand, within SM_b20840 at 631.554 kb on - strand, within SM_b20840 at 631.554 kb on - strand, within SM_b20840 at 631.611 kb on + strand, within SM_b20840 at 631.612 kb on - strand, within SM_b20840 at 631.782 kb on + strand, within SM_b20840 at 631.950 kb on + strand at 632.254 kb on - strand, within SM_b20841
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 630,210 - +2.2 630,226 - +2.0 630,267 - -1.1 630,514 + +0.8 630,515 - -0.4 630,515 - +1.2 630,515 - -1.6 630,516 + -0.1 630,516 + +2.5 630,516 + +0.2 630,587 + -0.3 630,588 - -2.4 630,588 - +0.4 630,717 + +0.9 630,717 + -1.3 630,717 + -1.3 630,778 + -3.3 630,779 - -1.1 630,944 - +0.3 631,207 - -1.6 631,248 + -3.4 631,248 + -0.5 631,249 - +0.4 631,257 - +0.5 631,257 - -1.6 631,258 + +0.1 631,258 + -0.5 631,258 + +3.4 631,258 + -0.4 631,258 + +0.7 631,259 - +0.2 631,259 - +0.1 631,261 + -0.9 631,262 - -1.1 631,358 + SM_b20840 0.22 -2.0 631,358 + SM_b20840 0.22 +0.1 631,358 + SM_b20840 0.22 -0.0 631,360 + SM_b20840 0.22 -1.6 631,360 + SM_b20840 0.22 -0.4 631,360 + SM_b20840 0.22 +0.2 631,360 + SM_b20840 0.22 +0.7 631,362 + SM_b20840 0.23 -0.5 631,362 + SM_b20840 0.23 +1.5 631,362 + SM_b20840 0.23 -0.4 631,362 + SM_b20840 0.23 -1.6 631,362 + SM_b20840 0.23 -1.1 631,419 + SM_b20840 0.31 +0.5 631,421 + SM_b20840 0.31 -0.1 631,422 - SM_b20840 0.31 +0.2 631,422 - SM_b20840 0.31 -0.2 631,541 - SM_b20840 0.48 -0.8 631,541 - SM_b20840 0.48 +0.2 631,554 - SM_b20840 0.50 +0.3 631,554 - SM_b20840 0.50 -0.4 631,611 + SM_b20840 0.59 -0.5 631,612 - SM_b20840 0.59 -1.1 631,782 + SM_b20840 0.83 -0.6 631,950 + -1.2 632,254 - SM_b20841 0.31 +3.1
Or see this region's nucleotide sequence