Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20392

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20391 and SM_b20392 are separated by 35 nucleotidesSM_b20392 and SM_b20393 are separated by 144 nucleotides SM_b20391: SM_b20391 - cellulose synthase catalytic subunit protein, at 403,650 to 405,644 _b20391 SM_b20392: SM_b20392 - transcriptional regulator NanR, at 405,680 to 406,387 _b20392 SM_b20393: SM_b20393 - ribulose bisphosphate carboxylaseoxygenase, large subunit protein, at 406,532 to 407,788 _b20393 Position (kb) 405 406 407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 404.691 kb on + strand, within SM_b20391at 404.692 kb on - strand, within SM_b20391at 404.776 kb on - strand, within SM_b20391at 404.776 kb on - strand, within SM_b20391at 404.807 kb on + strand, within SM_b20391at 404.808 kb on - strand, within SM_b20391at 404.896 kb on - strand, within SM_b20391at 404.896 kb on - strand, within SM_b20391at 404.932 kb on - strand, within SM_b20391at 404.960 kb on + strand, within SM_b20391at 405.078 kb on + strand, within SM_b20391at 405.079 kb on - strand, within SM_b20391at 405.080 kb on + strand, within SM_b20391at 405.081 kb on - strand, within SM_b20391at 405.483 kb on + strandat 405.483 kb on + strandat 405.483 kb on + strandat 405.484 kb on - strandat 405.484 kb on - strandat 405.487 kb on - strandat 405.501 kb on + strandat 405.501 kb on + strandat 405.502 kb on - strandat 405.547 kb on - strandat 405.681 kb on + strandat 405.681 kb on + strandat 405.682 kb on - strandat 405.682 kb on - strandat 405.682 kb on - strandat 405.699 kb on + strandat 405.700 kb on - strandat 405.803 kb on + strand, within SM_b20392at 405.804 kb on - strand, within SM_b20392at 405.886 kb on - strand, within SM_b20392at 405.887 kb on + strand, within SM_b20392at 406.076 kb on + strand, within SM_b20392at 406.076 kb on + strand, within SM_b20392at 406.077 kb on - strand, within SM_b20392at 406.207 kb on + strand, within SM_b20392at 406.208 kb on - strand, within SM_b20392at 406.208 kb on - strand, within SM_b20392at 406.517 kb on + strandat 406.517 kb on + strandat 406.518 kb on - strandat 406.536 kb on + strandat 406.536 kb on + strandat 406.547 kb on + strandat 406.547 kb on + strandat 406.682 kb on - strand, within SM_b20393at 406.836 kb on - strand, within SM_b20393at 406.836 kb on - strand, within SM_b20393at 406.836 kb on - strand, within SM_b20393at 407.055 kb on - strand, within SM_b20393at 407.174 kb on + strand, within SM_b20393at 407.174 kb on + strand, within SM_b20393at 407.175 kb on - strand, within SM_b20393at 407.187 kb on + strand, within SM_b20393at 407.188 kb on - strand, within SM_b20393

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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404,691 + SM_b20391 0.52 -0.2
404,692 - SM_b20391 0.52 +0.1
404,776 - SM_b20391 0.56 -0.6
404,776 - SM_b20391 0.56 -0.1
404,807 + SM_b20391 0.58 -1.6
404,808 - SM_b20391 0.58 -0.3
404,896 - SM_b20391 0.62 +2.0
404,896 - SM_b20391 0.62 -0.4
404,932 - SM_b20391 0.64 -0.6
404,960 + SM_b20391 0.66 -1.2
405,078 + SM_b20391 0.72 -0.1
405,079 - SM_b20391 0.72 +0.2
405,080 + SM_b20391 0.72 -1.0
405,081 - SM_b20391 0.72 -2.3
405,483 + +0.4
405,483 + +0.2
405,483 + -0.6
405,484 - -0.5
405,484 - -0.8
405,487 - -0.3
405,501 + -0.2
405,501 + -0.6
405,502 - -1.1
405,547 - +0.7
405,681 + +0.4
405,681 + -0.5
405,682 - -0.0
405,682 - +0.2
405,682 - -0.2
405,699 + -0.4
405,700 - +0.3
405,803 + SM_b20392 0.17 -2.5
405,804 - SM_b20392 0.18 -3.8
405,886 - SM_b20392 0.29 -1.6
405,887 + SM_b20392 0.29 -1.5
406,076 + SM_b20392 0.56 -0.2
406,076 + SM_b20392 0.56 -0.6
406,077 - SM_b20392 0.56 -2.8
406,207 + SM_b20392 0.74 -2.8
406,208 - SM_b20392 0.75 -1.8
406,208 - SM_b20392 0.75 +0.3
406,517 + -2.8
406,517 + -0.1
406,518 - +0.1
406,536 + +1.3
406,536 + +0.1
406,547 + +0.0
406,547 + +0.2
406,682 - SM_b20393 0.12 +0.3
406,836 - SM_b20393 0.24 +0.8
406,836 - SM_b20393 0.24 +0.3
406,836 - SM_b20393 0.24 -0.8
407,055 - SM_b20393 0.42 -0.1
407,174 + SM_b20393 0.51 -1.7
407,174 + SM_b20393 0.51 -0.2
407,175 - SM_b20393 0.51 -0.2
407,187 + SM_b20393 0.52 -0.2
407,188 - SM_b20393 0.52 +0.1

Or see this region's nucleotide sequence