Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20227 and SM_b20228 overlap by 8 nucleotides SM_b20228 and SM_b20229 overlap by 4 nucleotides SM_b20229 and SM_b20230 are separated by 231 nucleotides
SM_b20227: SM_b20227 - nutrient deprivation-induced protein, at 232,839 to 233,417
_b20227
SM_b20228: SM_b20228 - nutrient deprivation-induced protein, at 233,410 to 233,829
_b20228
SM_b20229: SM_b20229 - nutrient deprivation-induced protein, at 233,826 to 234,800
_b20229
SM_b20230: SM_b20230 - smc22-r protein, at 235,032 to 236,036
_b20230
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 232.919 kb on - strand, within SM_b20227 at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.407 kb on - strand at 233.407 kb on - strand at 233.415 kb on + strand at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.617 kb on + strand, within SM_b20228 at 233.749 kb on - strand, within SM_b20228 at 234.130 kb on - strand, within SM_b20229 at 234.130 kb on - strand, within SM_b20229 at 234.198 kb on + strand, within SM_b20229 at 234.298 kb on - strand, within SM_b20229 at 234.298 kb on - strand, within SM_b20229 at 234.308 kb on + strand, within SM_b20229 at 234.309 kb on - strand, within SM_b20229 at 234.309 kb on - strand, within SM_b20229 at 234.338 kb on + strand, within SM_b20229 at 234.339 kb on - strand, within SM_b20229 at 234.593 kb on - strand, within SM_b20229 at 235.069 kb on + strand at 235.070 kb on - strand at 235.130 kb on + strand at 235.130 kb on + strand at 235.131 kb on - strand at 235.164 kb on + strand, within SM_b20230 at 235.165 kb on - strand, within SM_b20230 at 235.168 kb on + strand, within SM_b20230 at 235.252 kb on - strand, within SM_b20230 at 235.264 kb on + strand, within SM_b20230 at 235.306 kb on + strand, within SM_b20230 at 235.307 kb on - strand, within SM_b20230 at 235.307 kb on - strand, within SM_b20230 at 235.352 kb on + strand, within SM_b20230 at 235.376 kb on - strand, within SM_b20230 at 235.376 kb on - strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.451 kb on - strand, within SM_b20230 at 235.451 kb on - strand, within SM_b20230 at 235.531 kb on - strand, within SM_b20230 at 235.545 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.698 kb on - strand, within SM_b20230 at 235.754 kb on - strand, within SM_b20230 at 235.754 kb on - strand, within SM_b20230
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 232,919 - SM_b20227 0.14 +0.7 233,406 + +0.1 233,406 + -0.3 233,406 + -1.1 233,406 + -0.0 233,407 - -0.5 233,407 - -0.6 233,415 + -0.2 233,469 + SM_b20228 0.14 +1.2 233,469 + SM_b20228 0.14 -0.4 233,469 + SM_b20228 0.14 +0.1 233,471 + SM_b20228 0.15 +0.9 233,471 + SM_b20228 0.15 +0.3 233,472 - SM_b20228 0.15 -2.9 233,472 - SM_b20228 0.15 +0.5 233,617 + SM_b20228 0.49 -3.0 233,749 - SM_b20228 0.81 +0.3 234,130 - SM_b20229 0.31 -0.5 234,130 - SM_b20229 0.31 -1.1 234,198 + SM_b20229 0.38 -0.2 234,298 - SM_b20229 0.48 -1.1 234,298 - SM_b20229 0.48 +0.2 234,308 + SM_b20229 0.49 -0.8 234,309 - SM_b20229 0.50 -0.1 234,309 - SM_b20229 0.50 +0.3 234,338 + SM_b20229 0.53 +0.2 234,339 - SM_b20229 0.53 +0.1 234,593 - SM_b20229 0.79 -0.8 235,069 + -0.5 235,070 - +0.3 235,130 + +0.4 235,130 + +0.8 235,131 - -0.9 235,164 + SM_b20230 0.13 -0.9 235,165 - SM_b20230 0.13 +0.3 235,168 + SM_b20230 0.14 -0.5 235,252 - SM_b20230 0.22 +0.7 235,264 + SM_b20230 0.23 +0.0 235,306 + SM_b20230 0.27 +0.1 235,307 - SM_b20230 0.27 +0.3 235,307 - SM_b20230 0.27 -0.8 235,352 + SM_b20230 0.32 +1.4 235,376 - SM_b20230 0.34 +0.5 235,376 - SM_b20230 0.34 +0.0 235,450 + SM_b20230 0.42 +1.2 235,450 + SM_b20230 0.42 +0.1 235,450 + SM_b20230 0.42 -0.3 235,451 - SM_b20230 0.42 +0.5 235,451 - SM_b20230 0.42 +0.2 235,531 - SM_b20230 0.50 +0.0 235,545 + SM_b20230 0.51 +3.8 235,692 + SM_b20230 0.66 -0.2 235,692 + SM_b20230 0.66 +1.1 235,692 + SM_b20230 0.66 +0.1 235,693 - SM_b20230 0.66 -0.5 235,693 - SM_b20230 0.66 +0.9 235,693 - SM_b20230 0.66 -2.2 235,698 - SM_b20230 0.66 +0.7 235,754 - SM_b20230 0.72 +0.3 235,754 - SM_b20230 0.72 -1.4
Or see this region's nucleotide sequence